Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 Y_RNA.692-201ENST00000516627 105 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 UBE2V2P2-201ENST00000587677 504 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 MIR376A1-201ENST00000616574 68 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 Y_RNA.279-201ENST00000364763 95 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 Y_RNA.366-201ENST00000365540 102 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 Y_RNA.496-201ENST00000384444 101 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 Y_RNA.622-201ENST00000411091 108 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 AC097635.1-201ENST00000450678 155 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 RNU6-1258P-201ENST00000516911 111 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 RNU7-188P-201ENST00000517063 64 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-1.02□□□□□ -2.57
LIMS3P0CW19 SNORD95.1-201ENST00000364099 68 ntBASIC-1.03□□□□□ -2.57
LIMS3P0CW19 RNU4-16P-201ENST00000364737 141 ntBASIC-1.03□□□□□ -2.57
LIMS3P0CW19 SNORD81.2-201ENST00000365153 76 ntBASIC-1.03□□□□□ -2.57
LIMS3P0CW19 SNORA3B-201ENST00000391305 131 ntBASIC-1.03□□□□□ -2.57
LIMS3P0CW19 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.03□□□□□ -2.57
LIMS3P0CW19 SNORD58B-201ENST00000607313 66 ntBASIC-1.03□□□□□ -2.57
LIMS3P0CW19 AL008718.3-201ENST00000610217 321 ntBASIC-1.03□□□□□ -2.57
LIMS3P0CW19 Y_RNA.171-201ENST00000363760 102 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 Y_RNA.323-201ENST00000365157 109 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 RNU6-47P-201ENST00000383866 107 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 Y_RNA.572-201ENST00000384757 98 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 RNY4P36-201ENST00000391116 96 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 SNORA53-201ENST00000391141 249 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-1.04□□□□□ -2.58
LIMS3P0CW19 RNU7-137P-201ENST00000516788 62 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 AC040926.1-201ENST00000530195 238 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 MIR3681-201ENST00000580089 72 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 MTND4LP32-201ENST00000636111 270 ntBASIC-1.04□□□□□ -2.58
LIMS3P0CW19 SNORA25.1-201ENST00000362326 128 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 Y_RNA.303-201ENST00000364998 94 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 RNU6-662P-201ENST00000384253 104 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 RNU6-138P-201ENST00000515952 107 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 Y_RNA.661-201ENST00000516003 99 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 AP001328.1-201ENST00000528550 176 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 MIR3920-201ENST00000581751 86 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 AL365205.2-201ENST00000594586 68 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 AC084782.3-201ENST00000612282 578 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 uc_338.10-201ENST00000621872 182 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 snoU18.1-201ENST00000629629 71 ntBASIC-1.05□□□□□ -2.58
LIMS3P0CW19 Y_RNA.105-201ENST00000363182 111 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 RNU1-141P-201ENST00000364623 158 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 Y_RNA.445-201ENST00000384168 102 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 RNY1P7-201ENST00000384743 110 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 MIR181B2-201ENST00000385004 89 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 RNU6-1228P-201ENST00000391014 107 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 MIR1265-201ENST00000408444 86 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 TRAJ51-201ENST00000504127 63 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 RNU7-13P-201ENST00000516413 62 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 RNU6-570P-201ENST00000517051 105 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 MIR4473-201ENST00000583731 91 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 AC037487.3-201ENST00000606668 112 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 AC104985.2-201ENST00000620598 500 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 AC093726.3-201ENST00000637588 150 ntBASIC-1.06□□□□□ -2.58
LIMS3P0CW19 RNU6-623P-201ENST00000363143 105 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 SNORD114-10-201ENST00000363409 72 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 Y_RNA.199-201ENST00000364014 102 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 Y_RNA.252-201ENST00000364556 101 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 Y_RNA.274-201ENST00000364714 101 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 SNORD114-29-201ENST00000364819 70 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 SNORD116-29-201ENST00000384516 83 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 SNORD115-46-201ENST00000390982 71 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 RNU7-113P-201ENST00000459273 62 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 SNORD67.1-201ENST00000516618 108 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 IGKV1-22-201ENST00000524313 326 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 AC080013.6-201ENST00000606185 215 ntBASIC-1.07□□□□□ -2.58
LIMS3P0CW19 RNU6-290P-201ENST00000365212 101 ntBASIC-1.08□□□□□ -2.58
LIMS3P0CW19 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.08□□□□□ -2.58
LIMS3P0CW19 Y_RNA.470-201ENST00000384307 117 ntBASIC-1.08□□□□□ -2.58
LIMS3P0CW19 AL603914.1-201ENST00000401964 204 ntBASIC-1.08□□□□□ -2.58
LIMS3P0CW19 RNA5SP33-201ENST00000516687 98 ntBASIC-1.08□□□□□ -2.58
LIMS3P0CW19 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-1.08□□□□□ -2.58
LIMS3P0CW19 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.08□□□□□ -2.58
LIMS3P0CW19 AC092794.1-201ENST00000612734 582 ntBASIC-1.08□□□□□ -2.58
LIMS3P0CW19 Y_RNA.80-201ENST00000362996 102 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 RNU6-326P-201ENST00000365480 107 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 RNU6-1336P-201ENST00000383886 109 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 Y_RNA.485-201ENST00000384395 102 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 RNU6-455P-201ENST00000384681 107 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 MT-TT-201ENST00000387460 66 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 Y_RNA.581-201ENST00000391017 97 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 AL606845.1-201ENST00000404881 255 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 SNORA27.4-201ENST00000516650 95 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 Y_RNA.718-201ENST00000517110 102 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 AC069503.3-201ENST00000618674 145 ntBASIC-1.09□□□□□ -2.58
LIMS3P0CW19 SNORD115-2-201ENST00000362842 82 ntBASIC-1.1□□□□□ -2.59
LIMS3P0CW19 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.1□□□□□ -2.59
LIMS3P0CW19 SNORD115-20-201ENST00000365099 82 ntBASIC-1.1□□□□□ -2.59
LIMS3P0CW19 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.1□□□□□ -2.59
LIMS3P0CW19 SNORA32-201ENST00000384072 121 ntBASIC-1.1□□□□□ -2.59
LIMS3P0CW19 SNORA79-201ENST00000408376 140 ntBASIC-1.1□□□□□ -2.59
LIMS3P0CW19 RNA5SP144-201ENST00000410846 116 ntBASIC-1.1□□□□□ -2.59
LIMS3P0CW19 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.11□□□□□ -2.59
LIMS3P0CW19 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.11□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 197.8 ms