Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNORD127-201ENST00000458892 86 ntBASIC0.21□□□□□ -2.38
HMGB1P09429 AC069113.3-201ENST00000521019 150 ntBASIC0.21□□□□□ -2.38
HMGB1P09429 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
HMGB1P09429 Y_RNA.539-201ENST00000384635 107 ntBASIC0.2□□□□□ -2.38
HMGB1P09429 RNU6-291P-201ENST00000384720 107 ntBASIC0.2□□□□□ -2.38
HMGB1P09429 RNA5SP299-201ENST00000391203 116 ntBASIC0.2□□□□□ -2.38
HMGB1P09429 AC096949.1-201ENST00000412047 152 ntBASIC0.2□□□□□ -2.38
HMGB1P09429 MTND1P19-201ENST00000511780 315 ntBASIC0.2□□□□□ -2.38
HMGB1P09429 Y_RNA.757-201ENST00000578934 114 ntBASIC0.2□□□□□ -2.38
HMGB1P09429 MIR6515-201ENST00000619843 57 ntBASIC0.2□□□□□ -2.38
HMGB1P09429 Y_RNA.171-201ENST00000363760 102 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 RNY4P28-201ENST00000365281 93 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 Y_RNA.571-201ENST00000384753 98 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 AC069271.1-201ENST00000445577 156 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 RNU6-135P-201ENST00000516769 101 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 Y_RNA.812-201ENST00000610788 101 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 Y_RNA.784-201ENST00000613803 101 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 Y_RNA.787-201ENST00000616522 101 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 Y_RNA.780-201ENST00000617336 101 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 Y_RNA.801-201ENST00000619005 101 ntBASIC0.19□□□□□ -2.38
HMGB1P09429 RNY1P6-201ENST00000384193 109 ntBASIC0.18□□□□□ -2.38
HMGB1P09429 RNU7-79P-201ENST00000516082 62 ntBASIC0.18□□□□□ -2.38
HMGB1P09429 RNU6-1194P-201ENST00000516208 104 ntBASIC0.18□□□□□ -2.38
HMGB1P09429 MIR4315-1-201ENST00000636800 73 ntBASIC0.18□□□□□ -2.38
HMGB1P09429 MIR4315-2-201ENST00000640925 73 ntBASIC0.18□□□□□ -2.38
HMGB1P09429 Y_RNA.121-201ENST00000363309 113 ntBASIC0.17□□□□□ -2.38
HMGB1P09429 Y_RNA.521-201ENST00000384560 114 ntBASIC0.17□□□□□ -2.38
HMGB1P09429 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
HMGB1P09429 RNU6-1258P-201ENST00000516911 111 ntBASIC0.17□□□□□ -2.38
HMGB1P09429 MIR7107-201ENST00000611489 80 ntBASIC0.17□□□□□ -2.38
HMGB1P09429 SNORD114-23-201ENST00000363536 72 ntBASIC0.16□□□□□ -2.38
HMGB1P09429 Y_RNA.477-201ENST00000384352 108 ntBASIC0.16□□□□□ -2.38
HMGB1P09429 MTND2P23-201ENST00000422990 651 ntBASIC0.16□□□□□ -2.38
HMGB1P09429 RNU7-113P-201ENST00000459273 62 ntBASIC0.16□□□□□ -2.38
HMGB1P09429 SCARNA16.5-201ENST00000517114 183 ntBASIC0.16□□□□□ -2.38
HMGB1P09429 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
HMGB1P09429 Y_RNA.269-201ENST00000364685 89 ntBASIC0.15□□□□□ -2.39
HMGB1P09429 RNU6-1336P-201ENST00000383886 109 ntBASIC0.15□□□□□ -2.39
HMGB1P09429 Y_RNA.423-201ENST00000384057 113 ntBASIC0.15□□□□□ -2.39
HMGB1P09429 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.15□□□□□ -2.39
HMGB1P09429 MIR924-201ENST00000638017 53 ntBASIC0.15□□□□□ -2.39
HMGB1P09429 MIR598-201ENST00000384868 97 ntBASIC0.14□□□□□ -2.39
HMGB1P09429 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.14□□□□□ -2.39
HMGB1P09429 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
HMGB1P09429 AL022718.1-201ENST00000412004 84 ntBASIC0.13□□□□□ -2.39
HMGB1P09429 MIR4308-201ENST00000580634 81 ntBASIC0.13□□□□□ -2.39
HMGB1P09429 AC091304.10-201ENST00000641554 121 ntBASIC0.13□□□□□ -2.39
HMGB1P09429 RNA5SP144-201ENST00000410846 116 ntBASIC0.12□□□□□ -2.39
HMGB1P09429 Y_RNA.626-201ENST00000411288 95 ntBASIC0.12□□□□□ -2.39
HMGB1P09429 RNA5SP33-201ENST00000516687 98 ntBASIC0.12□□□□□ -2.39
HMGB1P09429 RNU6-531P-201ENST00000516694 104 ntBASIC0.12□□□□□ -2.39
HMGB1P09429 RNA5SP47-201ENST00000517230 109 ntBASIC0.12□□□□□ -2.39
HMGB1P09429 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.12□□□□□ -2.39
HMGB1P09429 SNORA9.1-201ENST00000362412 131 ntBASIC0.11□□□□□ -2.39
HMGB1P09429 SNORA32-201ENST00000384072 121 ntBASIC0.11□□□□□ -2.39
HMGB1P09429 SNORD28-201ENST00000384706 75 ntBASIC0.11□□□□□ -2.39
HMGB1P09429 snoU13.18-201ENST00000459483 104 ntBASIC0.11□□□□□ -2.39
HMGB1P09429 RNU7-129P-201ENST00000516128 62 ntBASIC0.11□□□□□ -2.39
HMGB1P09429 Y_RNA.673-201ENST00000516306 88 ntBASIC0.11□□□□□ -2.39
HMGB1P09429 MIR4639-201ENST00000584938 69 ntBASIC0.11□□□□□ -2.39
HMGB1P09429 RNU4-58P-201ENST00000363192 141 ntBASIC0.1□□□□□ -2.39
HMGB1P09429 RNA5SP133-201ENST00000363368 119 ntBASIC0.1□□□□□ -2.39
HMGB1P09429 RNU6-275P-201ENST00000364910 107 ntBASIC0.1□□□□□ -2.39
HMGB1P09429 Y_RNA.470-201ENST00000384307 117 ntBASIC0.1□□□□□ -2.39
HMGB1P09429 MRPS18CP4-201ENST00000535821 231 ntBASIC0.1□□□□□ -2.39
HMGB1P09429 AC244669.1-204ENST00000621564 178 ntBASIC0.1□□□□□ -2.39
HMGB1P09429 AC010487.4-201ENST00000637027 61 ntBASIC0.1□□□□□ -2.39
HMGB1P09429 MIR6828-201ENST00000636181 60 ntBASIC0.09□□□□□ -2.4
HMGB1P09429 U6.109-201ENST00000636749 87 ntBASIC0.09□□□□□ -2.4
HMGB1P09429 MIR101-2-201ENST00000362195 79 ntBASIC0.08□□□□□ -2.4
HMGB1P09429 RNY1-201ENST00000364228 113 ntBASIC0.08□□□□□ -2.4
HMGB1P09429 Y_RNA.355-201ENST00000365462 98 ntBASIC0.08□□□□□ -2.4
HMGB1P09429 RNU6-738P-201ENST00000384531 106 ntBASIC0.08□□□□□ -2.4
HMGB1P09429 Y_RNA.562-201ENST00000384695 113 ntBASIC0.08□□□□□ -2.4
HMGB1P09429 RNU7-35P-201ENST00000517174 62 ntBASIC0.08□□□□□ -2.4
HMGB1P09429 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.08□□□□□ -2.4
HMGB1P09429 RNU6-187P-201ENST00000384139 106 ntBASIC0.07□□□□□ -2.4
HMGB1P09429 MIR6755-201ENST00000619993 66 ntBASIC0.07□□□□□ -2.4
HMGB1P09429 U6.106-201ENST00000636360 105 ntBASIC0.07□□□□□ -2.4
HMGB1P09429 Y_RNA.52-201ENST00000362760 96 ntBASIC0.06□□□□□ -2.4
HMGB1P09429 RNU6-690P-201ENST00000365242 106 ntBASIC0.06□□□□□ -2.4
HMGB1P09429 MIRLET7F2-201ENST00000385277 83 ntBASIC0.06□□□□□ -2.4
HMGB1P09429 MIR1302-3-201ENST00000408128 138 ntBASIC0.06□□□□□ -2.4
HMGB1P09429 AL358176.2-201ENST00000425769 204 ntBASIC0.06□□□□□ -2.4
HMGB1P09429 RNA5SP214-201ENST00000363378 118 ntBASIC0.05□□□□□ -2.4
HMGB1P09429 Y_RNA.412-201ENST00000384001 104 ntBASIC0.05□□□□□ -2.4
HMGB1P09429 Y_RNA.556-201ENST00000384677 113 ntBASIC0.05□□□□□ -2.4
HMGB1P09429 PCNPP3-201ENST00000393579 471 ntBASIC0.05□□□□□ -2.4
HMGB1P09429 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.05□□□□□ -2.4
HMGB1P09429 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.05□□□□□ -2.4
HMGB1P09429 TUG1_4.1-201ENST00000619464 181 ntBASIC0.05□□□□□ -2.4
HMGB1P09429 Y_RNA.508-201ENST00000384502 114 ntBASIC0.04□□□□□ -2.4
HMGB1P09429 AL360085.1-201ENST00000604713 532 ntBASIC0.04□□□□□ -2.4
HMGB1P09429 SNORA63.5-201ENST00000363548 123 ntBASIC0.03□□□□□ -2.4
HMGB1P09429 RNA5SP245-201ENST00000364239 121 ntBASIC0.03□□□□□ -2.4
HMGB1P09429 AC023932.2-201ENST00000603176 175 ntBASIC0.03□□□□□ -2.4
HMGB1P09429 PVT1_3.1-201ENST00000620853 95 ntBASIC0.03□□□□□ -2.4
HMGB1P09429 Y_RNA.49-201ENST00000362714 112 ntBASIC0.02□□□□□ -2.41
HMGB1P09429 Y_RNA.476-201ENST00000384347 108 ntBASIC0.02□□□□□ -2.41
HMGB1P09429 RNU6-1011P-201ENST00000384668 107 ntBASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 171.2 ms