Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SNORA51.5-201ENST00000384126 131 ntBASIC1.26□□□□□ -2.21
LDB3O75112 RNU6-905P-201ENST00000384434 107 ntBASIC1.26□□□□□ -2.21
LDB3O75112 RNU6-816P-201ENST00000390914 107 ntBASIC1.26□□□□□ -2.21
LDB3O75112 RNU6-1268P-201ENST00000391214 107 ntBASIC1.26□□□□□ -2.21
LDB3O75112 RNU6-1239P-201ENST00000391310 107 ntBASIC1.26□□□□□ -2.21
LDB3O75112 RPL39P39-201ENST00000455840 151 ntBASIC1.26□□□□□ -2.21
LDB3O75112 snoU13.16-201ENST00000459350 104 ntBASIC1.26□□□□□ -2.21
LDB3O75112 SNORA7.1-201ENST00000363750 139 ntBASIC1.25□□□□□ -2.21
LDB3O75112 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
LDB3O75112 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.25□□□□□ -2.21
LDB3O75112 RNU4-69P-201ENST00000410677 143 ntBASIC1.25□□□□□ -2.21
LDB3O75112 RPS3AP1-201ENST00000413190 320 ntBASIC1.25□□□□□ -2.21
LDB3O75112 AC244023.1-201ENST00000426884 112 ntBASIC1.25□□□□□ -2.21
LDB3O75112 RPS29P23-201ENST00000458635 123 ntBASIC1.25□□□□□ -2.21
LDB3O75112 RNU1-123P-201ENST00000458950 160 ntBASIC1.25□□□□□ -2.21
LDB3O75112 AC068338.1-201ENST00000565567 176 ntBASIC1.25□□□□□ -2.21
LDB3O75112 AC242498.1-201ENST00000604134 111 ntBASIC1.25□□□□□ -2.21
LDB3O75112 PRELID3BP2-201ENST00000605362 201 ntBASIC1.25□□□□□ -2.21
LDB3O75112 MIR7974-201ENST00000615835 79 ntBASIC1.25□□□□□ -2.21
LDB3O75112 AL161722.3-201ENST00000605789 2983 ntBASIC1.25□□□□□ -2.21
LDB3O75112 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
LDB3O75112 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.24□□□□□ -2.21
LDB3O75112 RNU6-766P-201ENST00000362478 107 ntBASIC1.24□□□□□ -2.21
LDB3O75112 MIR759-201ENST00000390224 91 ntBASIC1.24□□□□□ -2.21
LDB3O75112 RNU6-679P-201ENST00000391003 106 ntBASIC1.24□□□□□ -2.21
LDB3O75112 RNU6-955P-201ENST00000410497 104 ntBASIC1.24□□□□□ -2.21
LDB3O75112 AC245047.7-201ENST00000440265 293 ntBASIC1.24□□□□□ -2.21
LDB3O75112 RPL39P25-201ENST00000449384 154 ntBASIC1.24□□□□□ -2.21
LDB3O75112 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.24□□□□□ -2.21
LDB3O75112 RNU6-947P-201ENST00000516264 106 ntBASIC1.24□□□□□ -2.21
LDB3O75112 RNU6-165P-201ENST00000517170 99 ntBASIC1.24□□□□□ -2.21
LDB3O75112 AC141557.1-201ENST00000540982 400 ntBASIC1.24□□□□□ -2.21
LDB3O75112 CYP3A52P-201ENST00000563326 91 ntBASIC1.24□□□□□ -2.21
LDB3O75112 MIR3152-201ENST00000579801 74 ntBASIC1.24□□□□□ -2.21
LDB3O75112 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
LDB3O75112 Y_RNA.49-201ENST00000362714 112 ntBASIC1.23□□□□□ -2.21
LDB3O75112 RNU6-32P-201ENST00000383948 107 ntBASIC1.23□□□□□ -2.21
LDB3O75112 RNU6-13P-201ENST00000384248 107 ntBASIC1.23□□□□□ -2.21
LDB3O75112 SNORA18-201ENST00000384416 132 ntBASIC1.23□□□□□ -2.21
LDB3O75112 RNU6-12P-201ENST00000384604 107 ntBASIC1.23□□□□□ -2.21
LDB3O75112 RNU6-41P-201ENST00000384741 107 ntBASIC1.23□□□□□ -2.21
LDB3O75112 RNU6-1237P-201ENST00000384777 107 ntBASIC1.23□□□□□ -2.21
LDB3O75112 SNORA7.5-201ENST00000410672 110 ntBASIC1.23□□□□□ -2.21
LDB3O75112 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.23□□□□□ -2.21
LDB3O75112 RN7SKP88-201ENST00000516847 250 ntBASIC1.23□□□□□ -2.21
LDB3O75112 RNA5SP170-201ENST00000517150 101 ntBASIC1.23□□□□□ -2.21
LDB3O75112 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.23□□□□□ -2.21
LDB3O75112 MIR548Z-201ENST00000584743 97 ntBASIC1.23□□□□□ -2.21
LDB3O75112 7SK.8-201ENST00000612110 250 ntBASIC1.23□□□□□ -2.21
LDB3O75112 uc_338.6-201ENST00000613544 171 ntBASIC1.23□□□□□ -2.21
LDB3O75112 7SK.11-201ENST00000615477 250 ntBASIC1.23□□□□□ -2.21
LDB3O75112 AP001318.4-201ENST00000616637 121 ntBASIC1.23□□□□□ -2.21
LDB3O75112 7SK.13-201ENST00000622040 250 ntBASIC1.23□□□□□ -2.21
LDB3O75112 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
LDB3O75112 RNU4-67P-201ENST00000364569 141 ntBASIC1.22□□□□□ -2.21
LDB3O75112 Y_RNA.309-201ENST00000365046 111 ntBASIC1.22□□□□□ -2.21
LDB3O75112 MIR577-201ENST00000385196 96 ntBASIC1.22□□□□□ -2.21
LDB3O75112 MIR758-201ENST00000390227 88 ntBASIC1.22□□□□□ -2.21
LDB3O75112 MIR1302-5-201ENST00000408164 150 ntBASIC1.22□□□□□ -2.21
LDB3O75112 MIR1185-1-201ENST00000408598 86 ntBASIC1.22□□□□□ -2.21
LDB3O75112 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.22□□□□□ -2.21
LDB3O75112 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.22□□□□□ -2.21
LDB3O75112 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.22□□□□□ -2.21
LDB3O75112 AC004223.1-201ENST00000479840 271 ntBASIC1.22□□□□□ -2.21
LDB3O75112 RNU6-904P-201ENST00000516206 101 ntBASIC1.22□□□□□ -2.21
LDB3O75112 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
LDB3O75112 RNU6-363P-201ENST00000362895 105 ntBASIC1.21□□□□□ -2.22
LDB3O75112 RNU6-654P-201ENST00000364373 107 ntBASIC1.21□□□□□ -2.22
LDB3O75112 Y_RNA.247-201ENST00000364500 92 ntBASIC1.21□□□□□ -2.22
LDB3O75112 Y_RNA.360-201ENST00000365512 102 ntBASIC1.21□□□□□ -2.22
LDB3O75112 MIR488-201ENST00000365739 83 ntBASIC1.21□□□□□ -2.22
LDB3O75112 RNA5SP95-201ENST00000410319 137 ntBASIC1.21□□□□□ -2.22
LDB3O75112 AL603825.1-201ENST00000438481 80 ntBASIC1.21□□□□□ -2.22
LDB3O75112 AL133373.1-201ENST00000497098 94 ntBASIC1.21□□□□□ -2.22
LDB3O75112 UBL5P1-201ENST00000507979 193 ntBASIC1.21□□□□□ -2.22
LDB3O75112 AC108729.3-201ENST00000513484 108 ntBASIC1.21□□□□□ -2.22
LDB3O75112 Y_RNA.677-201ENST00000516401 85 ntBASIC1.21□□□□□ -2.22
LDB3O75112 RNU6-521P-201ENST00000516663 105 ntBASIC1.21□□□□□ -2.22
LDB3O75112 RNU7-35P-201ENST00000517174 62 ntBASIC1.21□□□□□ -2.22
LDB3O75112 AP003716.2-201ENST00000528260 108 ntBASIC1.21□□□□□ -2.22
LDB3O75112 AL157834.3-201ENST00000615543 103 ntBASIC1.21□□□□□ -2.22
LDB3O75112 AC091304.10-201ENST00000641554 121 ntBASIC1.21□□□□□ -2.22
LDB3O75112 RNU6-1255P-201ENST00000363434 112 ntBASIC1.2□□□□□ -2.22
LDB3O75112 RNU6-1099P-201ENST00000363533 107 ntBASIC1.2□□□□□ -2.22
LDB3O75112 Y_RNA.155-201ENST00000363632 101 ntBASIC1.2□□□□□ -2.22
LDB3O75112 Y_RNA.338-201ENST00000365320 114 ntBASIC1.2□□□□□ -2.22
LDB3O75112 SNORA40.6-201ENST00000391153 128 ntBASIC1.2□□□□□ -2.22
LDB3O75112 RNU6-1054P-201ENST00000411293 104 ntBASIC1.2□□□□□ -2.22
LDB3O75112 SNORD67.1-201ENST00000516618 108 ntBASIC1.2□□□□□ -2.22
LDB3O75112 MIR5582-201ENST00000579697 68 ntBASIC1.2□□□□□ -2.22
LDB3O75112 AC105081.1-201ENST00000617727 106 ntBASIC1.2□□□□□ -2.22
LDB3O75112 MIR6740-201ENST00000618268 113 ntBASIC1.2□□□□□ -2.22
LDB3O75112 AL353770.2-201ENST00000620024 78 ntBASIC1.2□□□□□ -2.22
LDB3O75112 MIR4679-1-201ENST00000637619 75 ntBASIC1.2□□□□□ -2.22
LDB3O75112 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.2□□□□□ -2.22
LDB3O75112 MIR26B-201ENST00000362251 77 ntBASIC1.19□□□□□ -2.22
LDB3O75112 RNA5SP48-201ENST00000363969 126 ntBASIC1.19□□□□□ -2.22
LDB3O75112 Y_RNA.299-201ENST00000364973 94 ntBASIC1.19□□□□□ -2.22
LDB3O75112 RNU6-49P-201ENST00000384256 107 ntBASIC1.19□□□□□ -2.22
LDB3O75112 MIR206-201ENST00000384872 86 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms