Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SNORA20-201ENST00000384662 132 ntBASIC0.28□□□□□ -2.36
MSH4O15457 MT-TF-201ENST00000387314 71 ntBASIC0.28□□□□□ -2.36
MSH4O15457 SNORD58.1-201ENST00000391313 66 ntBASIC0.28□□□□□ -2.36
MSH4O15457 SNORD100-201ENST00000408573 76 ntBASIC0.28□□□□□ -2.36
MSH4O15457 RNA5SP261-201ENST00000410536 106 ntBASIC0.28□□□□□ -2.36
MSH4O15457 RNA5SP127-201ENST00000411051 133 ntBASIC0.28□□□□□ -2.36
MSH4O15457 RNU6-1045P-201ENST00000516321 107 ntBASIC0.28□□□□□ -2.36
MSH4O15457 RNU6-1258P-201ENST00000516911 111 ntBASIC0.28□□□□□ -2.36
MSH4O15457 MIR4503-201ENST00000582187 83 ntBASIC0.28□□□□□ -2.36
MSH4O15457 Y_RNA.13-201ENST00000362403 112 ntBASIC0.27□□□□□ -2.37
MSH4O15457 Y_RNA.20-201ENST00000362479 113 ntBASIC0.27□□□□□ -2.37
MSH4O15457 Y_RNA.115-201ENST00000363272 98 ntBASIC0.27□□□□□ -2.37
MSH4O15457 RNA5SP517-201ENST00000364724 117 ntBASIC0.27□□□□□ -2.37
MSH4O15457 Y_RNA.307-201ENST00000365022 117 ntBASIC0.27□□□□□ -2.37
MSH4O15457 RNA5SP117-201ENST00000365294 118 ntBASIC0.27□□□□□ -2.37
MSH4O15457 Y_RNA.412-201ENST00000384001 104 ntBASIC0.27□□□□□ -2.37
MSH4O15457 Y_RNA.430-201ENST00000384081 110 ntBASIC0.27□□□□□ -2.37
MSH4O15457 SNORA18-201ENST00000384416 132 ntBASIC0.27□□□□□ -2.37
MSH4O15457 MIR644A-201ENST00000385262 94 ntBASIC0.27□□□□□ -2.37
MSH4O15457 SNORA25.12-201ENST00000516202 82 ntBASIC0.27□□□□□ -2.37
MSH4O15457 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
MSH4O15457 RNU6-448P-201ENST00000517052 107 ntBASIC0.27□□□□□ -2.37
MSH4O15457 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
MSH4O15457 AC141846.1-201ENST00000568348 142 ntBASIC0.27□□□□□ -2.37
MSH4O15457 MIR3678-201ENST00000578455 94 ntBASIC0.27□□□□□ -2.37
MSH4O15457 MIR8066-201ENST00000617280 78 ntBASIC0.27□□□□□ -2.37
MSH4O15457 Y_RNA.171-201ENST00000363760 102 ntBASIC0.26□□□□□ -2.37
MSH4O15457 SNORA20.1-201ENST00000364790 130 ntBASIC0.26□□□□□ -2.37
MSH4O15457 RNU6-716P-201ENST00000365621 103 ntBASIC0.26□□□□□ -2.37
MSH4O15457 RNU6-47P-201ENST00000383866 107 ntBASIC0.26□□□□□ -2.37
MSH4O15457 Y_RNA.447-201ENST00000384184 113 ntBASIC0.26□□□□□ -2.37
MSH4O15457 SNORA72.6-201ENST00000384520 129 ntBASIC0.26□□□□□ -2.37
MSH4O15457 Y_RNA.521-201ENST00000384560 114 ntBASIC0.26□□□□□ -2.37
MSH4O15457 Y_RNA.556-201ENST00000384677 113 ntBASIC0.26□□□□□ -2.37
MSH4O15457 MIR1197-201ENST00000408818 88 ntBASIC0.26□□□□□ -2.37
MSH4O15457 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.26□□□□□ -2.37
MSH4O15457 RNA5SP94-201ENST00000516917 108 ntBASIC0.26□□□□□ -2.37
MSH4O15457 MRPS18CP4-201ENST00000535821 231 ntBASIC0.26□□□□□ -2.37
MSH4O15457 SNORA25.18-201ENST00000607153 114 ntBASIC0.26□□□□□ -2.37
MSH4O15457 U4.1-201ENST00000620349 87 ntBASIC0.26□□□□□ -2.37
MSH4O15457 MIR6841-201ENST00000637129 72 ntBASIC0.26□□□□□ -2.37
MSH4O15457 MIR103A1-201ENST00000362165 78 ntBASIC0.25□□□□□ -2.37
MSH4O15457 Y_RNA.85-201ENST00000363014 111 ntBASIC0.25□□□□□ -2.37
MSH4O15457 Y_RNA.121-201ENST00000363309 113 ntBASIC0.25□□□□□ -2.37
MSH4O15457 RNU6-275P-201ENST00000364910 107 ntBASIC0.25□□□□□ -2.37
MSH4O15457 RNU6-1327P-201ENST00000365302 105 ntBASIC0.25□□□□□ -2.37
MSH4O15457 MIR624-201ENST00000385217 97 ntBASIC0.25□□□□□ -2.37
MSH4O15457 RNU6-918P-201ENST00000391219 106 ntBASIC0.25□□□□□ -2.37
MSH4O15457 SNORD71-201ENST00000411292 86 ntBASIC0.25□□□□□ -2.37
MSH4O15457 MTND3P2-201ENST00000438452 342 ntBASIC0.25□□□□□ -2.37
MSH4O15457 AC022559.1-201ENST00000520905 205 ntBASIC0.25□□□□□ -2.37
MSH4O15457 AC133485.4-201ENST00000561835 220 ntBASIC0.25□□□□□ -2.37
MSH4O15457 MIR4491-201ENST00000581087 68 ntBASIC0.25□□□□□ -2.37
MSH4O15457 AC099654.10-201ENST00000640395 161 ntBASIC0.25□□□□□ -2.37
MSH4O15457 Y_RNA.42-201ENST00000362660 108 ntBASIC0.24□□□□□ -2.37
MSH4O15457 RNA5SP457-201ENST00000363657 124 ntBASIC0.24□□□□□ -2.37
MSH4O15457 Y_RNA.193-201ENST00000363979 102 ntBASIC0.24□□□□□ -2.37
MSH4O15457 SNORA25.7-201ENST00000364375 127 ntBASIC0.24□□□□□ -2.37
MSH4O15457 RNU6-1082P-201ENST00000364574 107 ntBASIC0.24□□□□□ -2.37
MSH4O15457 RNU6-196P-201ENST00000384315 107 ntBASIC0.24□□□□□ -2.37
MSH4O15457 RNU6-768P-201ENST00000384683 107 ntBASIC0.24□□□□□ -2.37
MSH4O15457 Y_RNA.567-201ENST00000384736 106 ntBASIC0.24□□□□□ -2.37
MSH4O15457 Y_RNA.588-201ENST00000391254 102 ntBASIC0.24□□□□□ -2.37
MSH4O15457 SNORA40.8-201ENST00000411034 126 ntBASIC0.24□□□□□ -2.37
MSH4O15457 AC096949.1-201ENST00000412047 152 ntBASIC0.24□□□□□ -2.37
MSH4O15457 Y_RNA.757-201ENST00000578934 114 ntBASIC0.24□□□□□ -2.37
MSH4O15457 RNU6-702P-201ENST00000364982 107 ntBASIC0.23□□□□□ -2.37
MSH4O15457 RNY1P13-201ENST00000365030 105 ntBASIC0.23□□□□□ -2.37
MSH4O15457 Y_RNA.470-201ENST00000384307 117 ntBASIC0.23□□□□□ -2.37
MSH4O15457 MIR518A1-201ENST00000385068 85 ntBASIC0.23□□□□□ -2.37
MSH4O15457 AC108740.1-201ENST00000498629 225 ntBASIC0.23□□□□□ -2.37
MSH4O15457 RNU6-1023P-201ENST00000516137 106 ntBASIC0.23□□□□□ -2.37
MSH4O15457 RNU4-71P-201ENST00000516258 113 ntBASIC0.23□□□□□ -2.37
MSH4O15457 SNORA25.16-201ENST00000516741 121 ntBASIC0.23□□□□□ -2.37
MSH4O15457 MTND5P34-201ENST00000568888 325 ntBASIC0.23□□□□□ -2.37
MSH4O15457 AC023932.2-201ENST00000603176 175 ntBASIC0.23□□□□□ -2.37
MSH4O15457 MIR6082-201ENST00000613604 109 ntBASIC0.23□□□□□ -2.37
MSH4O15457 uc_338.16-201ENST00000621804 95 ntBASIC0.23□□□□□ -2.37
MSH4O15457 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.23□□□□□ -2.37
MSH4O15457 MIR411-201ENST00000362239 96 ntBASIC0.22□□□□□ -2.37
MSH4O15457 Y_RNA.52-201ENST00000362760 96 ntBASIC0.22□□□□□ -2.37
MSH4O15457 SNORD44.1-201ENST00000363202 61 ntBASIC0.22□□□□□ -2.37
MSH4O15457 Y_RNA.200-201ENST00000364018 102 ntBASIC0.22□□□□□ -2.37
MSH4O15457 RNU4-67P-201ENST00000364569 141 ntBASIC0.22□□□□□ -2.37
MSH4O15457 RNU6-949P-201ENST00000384040 107 ntBASIC0.22□□□□□ -2.37
MSH4O15457 SNORA32-201ENST00000384072 121 ntBASIC0.22□□□□□ -2.37
MSH4O15457 RNY1P6-201ENST00000384193 109 ntBASIC0.22□□□□□ -2.37
MSH4O15457 Y_RNA.478-201ENST00000384358 107 ntBASIC0.22□□□□□ -2.37
MSH4O15457 RNU6-1086P-201ENST00000410930 100 ntBASIC0.22□□□□□ -2.37
MSH4O15457 RNU7-79P-201ENST00000516082 62 ntBASIC0.22□□□□□ -2.37
MSH4O15457 AC022523.2-201ENST00000561045 150 ntBASIC0.22□□□□□ -2.37
MSH4O15457 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
MSH4O15457 MIR3149-201ENST00000584629 83 ntBASIC0.22□□□□□ -2.37
MSH4O15457 MIR2909-201ENST00000617113 69 ntBASIC0.22□□□□□ -2.37
MSH4O15457 AL109933.3-201ENST00000619095 188 ntBASIC0.22□□□□□ -2.37
MSH4O15457 Y_RNA.32-201ENST00000362589 110 ntBASIC0.21□□□□□ -2.38
MSH4O15457 Y_RNA.75-201ENST00000362927 97 ntBASIC0.21□□□□□ -2.38
MSH4O15457 Y_RNA.83-201ENST00000363005 113 ntBASIC0.21□□□□□ -2.38
MSH4O15457 SNORA36.1-201ENST00000363424 132 ntBASIC0.21□□□□□ -2.38
MSH4O15457 SNORA8.2-201ENST00000384372 139 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 562.2 ms