Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm15500-202ENSMUST00000071641 1019 ntBASIC18.85■□□□□ 0.61
Scn11aQ9R053 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn11aQ9R053 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn11aQ9R053 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Scn11aQ9R053 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn11aQ9R053 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
Scn11aQ9R053 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Gm18246-201ENSMUST00000221023 728 ntBASIC18.84■□□□□ 0.61
Scn11aQ9R053 AC139382.1-201ENSMUST00000221402 498 ntBASIC18.84■□□□□ 0.61
Scn11aQ9R053 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Scn11aQ9R053 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn11aQ9R053 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Gm13616-201ENSMUST00000120600 222 ntBASIC18.83■□□□□ 0.61
Scn11aQ9R053 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Scn11aQ9R053 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.83■□□□□ 0.61
Scn11aQ9R053 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn11aQ9R053 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn11aQ9R053 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn11aQ9R053 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.83■□□□□ 0.6
Scn11aQ9R053 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn11aQ9R053 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
Scn11aQ9R053 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn11aQ9R053 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC18.83■□□□□ 0.6
Scn11aQ9R053 Gm23547-201ENSMUST00000158210 271 ntBASIC18.83■□□□□ 0.6
Scn11aQ9R053 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn11aQ9R053 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC18.83■□□□□ 0.6
Scn11aQ9R053 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn11aQ9R053 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.81■□□□□ 0.6
Scn11aQ9R053 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Gm7669-201ENSMUST00000210184 1603 ntBASIC18.81■□□□□ 0.6
Scn11aQ9R053 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Gm5745-201ENSMUST00000183748 313 ntBASIC18.81■□□□□ 0.6
Scn11aQ9R053 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 AC159295.1-201ENSMUST00000225326 940 ntBASIC18.81■□□□□ 0.6
Scn11aQ9R053 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 AC124392.1-201ENSMUST00000225172 5324 ntBASIC18.81■□□□□ 0.6
Scn11aQ9R053 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn11aQ9R053 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms