Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Gm10252-201ENSMUST00000209541 832 ntBASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Lima1Q9ERG0 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Gm11539-201ENSMUST00000119837 557 ntBASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Gm13436-201ENSMUST00000120418 567 ntBASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Gfra2-202ENSMUST00000227633 1480 ntBASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lima1Q9ERG0 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Lima1Q9ERG0 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Lima1Q9ERG0 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
Lima1Q9ERG0 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Lima1Q9ERG0 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Lima1Q9ERG0 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
Lima1Q9ERG0 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lima1Q9ERG0 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Gm13559-201ENSMUST00000120476 863 ntBASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Gm7370-201ENSMUST00000219471 767 ntBASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lima1Q9ERG0 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Gm2274-201ENSMUST00000184539 609 ntBASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Lima1Q9ERG0 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms