Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ddx56Q9D0R4 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Mir6404-201ENSMUST00000183699 94 ntBASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ddx56Q9D0R4 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Gm13312-201ENSMUST00000119631 718 ntBASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Gm27742-201ENSMUST00000184667 60 ntBASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ddx56Q9D0R4 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Olfr129-201ENSMUST00000122318 993 ntBASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ddx56Q9D0R4 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Gm27704-201ENSMUST00000185094 107 ntBASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms