Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Gm13884-201ENSMUST00000118103 829 ntBASIC18.86■□□□□ 0.61
Trim56Q80VI1 Gm12497-201ENSMUST00000138778 237 ntBASIC18.86■□□□□ 0.61
Trim56Q80VI1 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Ntrk2-205ENSMUST00000224402 2284 ntBASIC18.86■□□□□ 0.61
Trim56Q80VI1 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim56Q80VI1 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.85■□□□□ 0.61
Trim56Q80VI1 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim56Q80VI1 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Gm8097-201ENSMUST00000117903 829 ntBASIC18.84■□□□□ 0.61
Trim56Q80VI1 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim56Q80VI1 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Trim56Q80VI1 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC18.83■□□□□ 0.61
Trim56Q80VI1 Gm19430-201ENSMUST00000193847 2137 ntBASIC18.83■□□□□ 0.61
Trim56Q80VI1 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim56Q80VI1 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim56Q80VI1 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim56Q80VI1 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
Trim56Q80VI1 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Trim56Q80VI1 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Mir8098-201ENSMUST00000184011 137 ntBASIC18.83■□□□□ 0.6
Trim56Q80VI1 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim56Q80VI1 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm4609-201ENSMUST00000106443 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm5138-201ENSMUST00000113842 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm15191-201ENSMUST00000117933 1000 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm12182-201ENSMUST00000118655 1008 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms