Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC20.19■□□□□ 0.82
Clcn1Q64347 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC20.19■□□□□ 0.82
Clcn1Q64347 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC20.19■□□□□ 0.82
Clcn1Q64347 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC20.19■□□□□ 0.82
Clcn1Q64347 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Clcn1Q64347 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Clcn1Q64347 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clcn1Q64347 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Grk6-207ENSMUST00000225925 2769 ntBASIC20.18■□□□□ 0.82
Clcn1Q64347 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Clcn1Q64347 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Mir6404-201ENSMUST00000183699 94 ntBASIC20.18■□□□□ 0.82
Clcn1Q64347 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC20.18■□□□□ 0.82
Clcn1Q64347 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Clcn1Q64347 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clcn1Q64347 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC20.18■□□□□ 0.82
Clcn1Q64347 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Clcn1Q64347 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
Clcn1Q64347 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Clcn1Q64347 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 AC151286.1-201ENSMUST00000198489 145 ntBASIC20.17■□□□□ 0.82
Clcn1Q64347 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Clcn1Q64347 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Clcn1Q64347 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clcn1Q64347 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC20.16■□□□□ 0.82
Clcn1Q64347 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC20.16■□□□□ 0.82
Clcn1Q64347 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC20.16■□□□□ 0.82
Clcn1Q64347 Gm45683-201ENSMUST00000210825 1247 ntBASIC20.16■□□□□ 0.82
Clcn1Q64347 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
Clcn1Q64347 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clcn1Q64347 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC20.15■□□□□ 0.82
Clcn1Q64347 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Clcn1Q64347 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Clcn1Q64347 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC20.15■□□□□ 0.82
Clcn1Q64347 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Clcn1Q64347 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Clcn1Q64347 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Clcn1Q64347 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Clcn1Q64347 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Clcn1Q64347 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC20.14■□□□□ 0.82
Clcn1Q64347 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Clcn1Q64347 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Clcn1Q64347 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms