Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim28Q62318 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Trim28Q62318 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Trim28Q62318 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Gm18489-201ENSMUST00000172565 551 ntBASIC20.71■□□□□ 0.91
Trim28Q62318 Gm27300-201ENSMUST00000184085 97 ntBASIC20.71■□□□□ 0.91
Trim28Q62318 Gm27335-201ENSMUST00000184758 97 ntBASIC20.71■□□□□ 0.91
Trim28Q62318 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Trim28Q62318 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim28Q62318 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Trim28Q62318 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
Trim28Q62318 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim28Q62318 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC20.7■□□□□ 0.9
Trim28Q62318 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim28Q62318 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim28Q62318 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC20.7■□□□□ 0.9
Trim28Q62318 Gm12260-201ENSMUST00000122447 411 ntBASIC20.7■□□□□ 0.9
Trim28Q62318 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC20.7■□□□□ 0.9
Trim28Q62318 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC20.7■□□□□ 0.9
Trim28Q62318 Gm5253-201ENSMUST00000187104 1025 ntBASIC20.7■□□□□ 0.9
Trim28Q62318 Gm9682-201ENSMUST00000197505 556 ntBASIC20.7■□□□□ 0.9
Trim28Q62318 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC20.7■□□□□ 0.9
Trim28Q62318 AC131709.1-201ENSMUST00000224731 1180 ntBASIC20.7■□□□□ 0.9
Trim28Q62318 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim28Q62318 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC20.7■□□□□ 0.9
Trim28Q62318 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Trim28Q62318 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim28Q62318 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim28Q62318 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC20.69■□□□□ 0.9
Trim28Q62318 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC20.69■□□□□ 0.9
Trim28Q62318 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Gm10175-201ENSMUST00000086013 645 ntBASIC20.69■□□□□ 0.9
Trim28Q62318 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC20.69■□□□□ 0.9
Trim28Q62318 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim28Q62318 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC20.68■□□□□ 0.9
Trim28Q62318 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC20.68■□□□□ 0.9
Trim28Q62318 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Gm43073-201ENSMUST00000198200 1189 ntBASIC20.68■□□□□ 0.9
Trim28Q62318 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Trim28Q62318 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Trim28Q62318 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim28Q62318 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Trim28Q62318 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC20.67■□□□□ 0.9
Trim28Q62318 Gm11594-201ENSMUST00000122313 162 ntBASIC20.67■□□□□ 0.9
Trim28Q62318 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms