Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm25745-201ENSMUST00000174945 133 ntBASIC16.15■□□□□ 0.18
Six4Q61321 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.15■□□□□ 0.18
Six4Q61321 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Six4Q61321 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Six4Q61321 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
Six4Q61321 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Six4Q61321 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Six4Q61321 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
Six4Q61321 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Six4Q61321 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Six4Q61321 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.14■□□□□ 0.17
Six4Q61321 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.14■□□□□ 0.17
Six4Q61321 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Six4Q61321 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.14■□□□□ 0.17
Six4Q61321 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Six4Q61321 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.14■□□□□ 0.17
Six4Q61321 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Six4Q61321 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six4Q61321 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.14■□□□□ 0.17
Six4Q61321 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.13■□□□□ 0.17
Six4Q61321 Gm34391-201ENSMUST00000203706 907 ntBASIC16.13■□□□□ 0.17
Six4Q61321 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.13■□□□□ 0.17
Six4Q61321 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Six4Q61321 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six4Q61321 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.13■□□□□ 0.17
Six4Q61321 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
Six4Q61321 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
Six4Q61321 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Six4Q61321 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.12■□□□□ 0.17
Six4Q61321 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.12■□□□□ 0.17
Six4Q61321 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Six4Q61321 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Six4Q61321 Gm12644-201ENSMUST00000119935 606 ntBASIC16.12■□□□□ 0.17
Six4Q61321 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Six4Q61321 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC16.12■□□□□ 0.17
Six4Q61321 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.12■□□□□ 0.17
Six4Q61321 Gm17971-201ENSMUST00000190239 806 ntBASIC16.12■□□□□ 0.17
Six4Q61321 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.12■□□□□ 0.17
Six4Q61321 Gm7506-201ENSMUST00000207758 815 ntBASIC16.12■□□□□ 0.17
Six4Q61321 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.12■□□□□ 0.17
Six4Q61321 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.12■□□□□ 0.17
Six4Q61321 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Six4Q61321 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Six4Q61321 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC16.11■□□□□ 0.17
Six4Q61321 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Six4Q61321 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Six4Q61321 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six4Q61321 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms