Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Gm9794-201ENSMUST00000202370 423 ntBASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Zcchc6-207ENSMUST00000225576 2499 ntBASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col27a1Q5QNQ9 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Gm7286-201ENSMUST00000182691 1007 ntBASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Gm43433-201ENSMUST00000196573 481 ntBASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 AC135669.1-201ENSMUST00000213585 412 ntBASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col27a1Q5QNQ9 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col27a1Q5QNQ9 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Gm28630-201ENSMUST00000187806 498 ntBASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Gm15222-202ENSMUST00000228667 1726 ntBASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col27a1Q5QNQ9 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Gm16215-201ENSMUST00000161990 637 ntBASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Col27a1Q5QNQ9 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Col27a1Q5QNQ9 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC15.3■□□□□ 0.04
Col27a1Q5QNQ9 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.04
Col27a1Q5QNQ9 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC15.3■□□□□ 0.04
Col27a1Q5QNQ9 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.3■□□□□ 0.04
Col27a1Q5QNQ9 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms