Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Gm10052-201ENSMUST00000168019 960 ntBASIC18.2■□□□□ 0.5
Usp28Q5I043 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Gm7729-201ENSMUST00000050143 801 ntBASIC18.2■□□□□ 0.5
Usp28Q5I043 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.19■□□□□ 0.5
Usp28Q5I043 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Usp28Q5I043 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Usp28Q5I043 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC18.19■□□□□ 0.5
Usp28Q5I043 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Usp28Q5I043 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC18.19■□□□□ 0.5
Usp28Q5I043 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp28Q5I043 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Usp28Q5I043 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Mir770-201ENSMUST00000103252 94 ntBASIC18.18■□□□□ 0.5
Usp28Q5I043 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC18.18■□□□□ 0.5
Usp28Q5I043 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp28Q5I043 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC18.17■□□□□ 0.5
Usp28Q5I043 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Usp28Q5I043 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.17■□□□□ 0.5
Usp28Q5I043 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.17■□□□□ 0.5
Usp28Q5I043 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Usp28Q5I043 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Usp28Q5I043 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Usp28Q5I043 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Usp28Q5I043 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp28Q5I043 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms