Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 AC069562.2-201ENSMUST00000224644 2146 ntBASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Gm44454-201ENSMUST00000198541 138 ntBASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Gm18669-201ENSMUST00000216049 778 ntBASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Upf3bQ3ULL6 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3bQ3ULL6 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf3bQ3ULL6 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms