Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.63■□□□□ 0.41
Col6a1Q04857 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC17.63■□□□□ 0.41
Col6a1Q04857 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.63■□□□□ 0.41
Col6a1Q04857 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.63■□□□□ 0.41
Col6a1Q04857 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.63■□□□□ 0.41
Col6a1Q04857 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Col6a1Q04857 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.63■□□□□ 0.41
Col6a1Q04857 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.63■□□□□ 0.41
Col6a1Q04857 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col6a1Q04857 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.62■□□□□ 0.41
Col6a1Q04857 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Col6a1Q04857 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col6a1Q04857 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
Col6a1Q04857 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Col6a1Q04857 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.61■□□□□ 0.41
Col6a1Q04857 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.61■□□□□ 0.41
Col6a1Q04857 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Col6a1Q04857 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Col6a1Q04857 Gm8396-201ENSMUST00000057361 823 ntBASIC17.61■□□□□ 0.41
Col6a1Q04857 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Gm13127-201ENSMUST00000118978 1389 ntBASIC17.61■□□□□ 0.41
Col6a1Q04857 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.61■□□□□ 0.41
Col6a1Q04857 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
Col6a1Q04857 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Col6a1Q04857 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Col6a1Q04857 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col6a1Q04857 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.6■□□□□ 0.41
Col6a1Q04857 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Col6a1Q04857 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.6■□□□□ 0.41
Col6a1Q04857 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC17.6■□□□□ 0.41
Col6a1Q04857 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC17.6■□□□□ 0.41
Col6a1Q04857 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.6■□□□□ 0.41
Col6a1Q04857 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.6■□□□□ 0.41
Col6a1Q04857 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC17.6■□□□□ 0.41
Col6a1Q04857 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC17.6■□□□□ 0.41
Col6a1Q04857 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC17.6■□□□□ 0.41
Col6a1Q04857 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17.6■□□□□ 0.41
Col6a1Q04857 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Col6a1Q04857 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.6■□□□□ 0.41
Col6a1Q04857 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col6a1Q04857 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms