Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Gm14859-201ENSMUST00000117752 357 ntBASIC14.63□□□□□ -0.07
Cdh11P55288 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Gm25016-201ENSMUST00000158399 131 ntBASIC14.63□□□□□ -0.07
Cdh11P55288 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Cdh11P55288 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Cdh11P55288 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.63□□□□□ -0.07
Cdh11P55288 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
Cdh11P55288 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.63□□□□□ -0.07
Cdh11P55288 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Cdh11P55288 Gm45212-201ENSMUST00000205831 3403 ntBASIC14.63□□□□□ -0.07
Cdh11P55288 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Prob1-201ENSMUST00000097619 3021 ntBASIC14.63□□□□□ -0.07
Cdh11P55288 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdh11P55288 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC14.62□□□□□ -0.07
Cdh11P55288 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Cdh11P55288 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Cdh11P55288 Gm10819-201ENSMUST00000099988 561 ntBASIC14.62□□□□□ -0.07
Cdh11P55288 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdh11P55288 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Cdh11P55288 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Cdh11P55288 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Gm44616-201ENSMUST00000206417 1732 ntBASIC14.61□□□□□ -0.07
Cdh11P55288 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.61□□□□□ -0.07
Cdh11P55288 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC14.61□□□□□ -0.07
Cdh11P55288 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC14.61□□□□□ -0.07
Cdh11P55288 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.61□□□□□ -0.07
Cdh11P55288 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Cdh11P55288 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Cdh11P55288 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdh11P55288 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Cdh11P55288 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Cdh11P55288 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Cdh11P55288 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC14.6□□□□□ -0.07
Cdh11P55288 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdh11P55288 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdh11P55288 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
Cdh11P55288 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms