Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6-705P-201ENST00000410601 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-1100P-201ENST00000410691 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-860P-201ENST00000410860 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-1217P-201ENST00000411276 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-785P-201ENST00000411324 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNA5SP445-201ENST00000515889 115 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU2-19P-201ENST00000517288 84 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 U6.90-201ENST00000614007 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 U6.70-201ENST00000620287 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 MIR4251-201ENST00000635819 61 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-859P-201ENST00000362728 107 ntBASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 SNORD115-37-201ENST00000363768 82 ntBASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-480P-201ENST00000384332 107 ntBASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-519P-201ENST00000410590 108 ntBASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 RNU7-41P-201ENST00000515917 61 ntBASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 RNU7-153P-201ENST00000516455 62 ntBASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 AC133485.1-201ENST00000567176 124 ntBASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
HIF3AQ9Y2N7 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 MIR6073-201ENST00000352083 89 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 RNU4-32P-201ENST00000363404 141 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 DEFA7P-201ENST00000382676 285 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-203P-201ENST00000384038 104 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 SNORD38B-201ENST00000384690 67 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 Y_RNA.565-201ENST00000384719 101 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 MIR194-1-201ENST00000384892 85 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 AC139453.2-201ENST00000487255 133 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 AC141846.1-201ENST00000568348 142 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 SNORD38B-202ENST00000625943 69 ntBASIC2.29□□□□□ -2.04
HIF3AQ9Y2N7 AC004965.1-201ENST00000413033 213 ntBASIC2.28□□□□□ -2.04
HIF3AQ9Y2N7 GTF3AP2-201ENST00000557014 266 ntBASIC2.28□□□□□ -2.04
HIF3AQ9Y2N7 DEFB122-202ENST00000569013 197 ntBASIC2.28□□□□□ -2.04
HIF3AQ9Y2N7 AC090897.1-201ENST00000580909 226 ntBASIC2.28□□□□□ -2.04
HIF3AQ9Y2N7 AL033523.1-201ENST00000605153 153 ntBASIC2.28□□□□□ -2.04
HIF3AQ9Y2N7 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
HIF3AQ9Y2N7 RNA5SP456-201ENST00000364002 114 ntBASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 AC087499.7-201ENST00000441958 109 ntBASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 SNORD109B-201ENST00000458961 67 ntBASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 SNORD109A-201ENST00000459128 67 ntBASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 AC055731.1-201ENST00000474387 401 ntBASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 RNA5SP82-201ENST00000516707 92 ntBASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 AC140658.3-201ENST00000567603 271 ntBASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.27□□□□□ -2.05
HIF3AQ9Y2N7 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 MIR653-201ENST00000385279 96 ntBASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 AC009474.2-201ENST00000451383 136 ntBASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 RNU6-322P-201ENST00000516010 103 ntBASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 MIR3935-201ENST00000583472 104 ntBASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 AL662814.1-201ENST00000617364 121 ntBASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
HIF3AQ9Y2N7 RNU6-1229P-201ENST00000364295 107 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 MIR144-201ENST00000384886 86 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 MIR27B-201ENST00000385129 97 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 RNU4-83P-201ENST00000410863 133 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 RPS27P21-201ENST00000486977 252 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 RPS29P11-201ENST00000496507 171 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 RNA5SP356-201ENST00000515972 94 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 MIR6895-201ENST00000613497 78 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.25□□□□□ -2.05
HIF3AQ9Y2N7 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.24□□□□□ -2.05
HIF3AQ9Y2N7 AL161722.3-201ENST00000605789 2983 ntBASIC2.24□□□□□ -2.05
HIF3AQ9Y2N7 RNA5SP212-201ENST00000391223 107 ntBASIC2.24□□□□□ -2.05
HIF3AQ9Y2N7 MIR4500-201ENST00000579472 76 ntBASIC2.24□□□□□ -2.05
HIF3AQ9Y2N7 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
HIF3AQ9Y2N7 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HIF3AQ9Y2N7 MIR449A-201ENST00000362113 91 ntBASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 Y_RNA.57-201ENST00000362806 113 ntBASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 RNA5SP133-201ENST00000363368 119 ntBASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 RNU6-301P-201ENST00000384277 107 ntBASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 SNORD111.1-201ENST00000516421 86 ntBASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 AC145423.2-201ENST00000610631 239 ntBASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 U4.3-201ENST00000621047 82 ntBASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.23□□□□□ -2.05
HIF3AQ9Y2N7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 HSBP1P2-201ENST00000299671 229 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 AL161935.2-201ENST00000414627 60 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 AL450471.1-201ENST00000447509 127 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 AC023790.1-201ENST00000482174 347 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 SNORA25.13-201ENST00000516395 103 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 MIR4319-201ENST00000577285 85 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 MIR4672-201ENST00000583126 81 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 AP000753.3-201ENST00000604083 169 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 MIR8066-201ENST00000617280 78 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 U6.109-201ENST00000636749 87 ntBASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
HIF3AQ9Y2N7 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.05
HIF3AQ9Y2N7 RNA5SP276-201ENST00000362580 94 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 RNA5SP259-201ENST00000365541 109 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 SNORA6-201ENST00000384033 151 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 RNU6-949P-201ENST00000384040 107 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 MIR1236-201ENST00000408340 102 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 202.4 ms