Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SNORD58C-201ENST00000365223 64 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 RNU4-62P-201ENST00000410125 130 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 Y_RNA.629-201ENST00000411368 105 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-772P-201ENST00000516042 105 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-240P-201ENST00000516098 97 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 RNU1-92P-201ENST00000517017 135 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 MIR3914-2-201ENST00000637339 95 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 MIR378A-201ENST00000362177 66 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 Y_RNA.366-201ENST00000365540 102 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 Y_RNA.525-201ENST00000384570 113 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 MIR518E-201ENST00000385252 88 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 MIR1185-1-201ENST00000408598 86 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 MIR1302-7-201ENST00000408841 72 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 RNA5SP136-201ENST00000410906 107 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-781P-201ENST00000516377 101 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 IGKV1-22-201ENST00000524313 326 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 MIR3660-201ENST00000584845 100 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 U6.95-201ENST00000636931 70 ntBASIC1.49□□□□□ -2.17
LIMCH1Q9UPQ0 Y_RNA.273-201ENST00000364703 102 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA25.9-201ENST00000365087 128 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 Y_RNA.346-201ENST00000365385 112 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 MIRLET7F2-201ENST00000385277 83 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 MT-TN-201ENST00000387400 73 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA40.6-201ENST00000391153 128 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 MIR1263-201ENST00000408324 86 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-321P-201ENST00000410912 106 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 AL022718.1-201ENST00000412004 84 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 RNU7-45P-201ENST00000459460 63 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 AP000753.3-201ENST00000604083 169 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 AC021443.1-201ENST00000604478 211 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 AC025166.1-201ENST00000612411 163 ntBASIC1.48□□□□□ -2.17
LIMCH1Q9UPQ0 SNORD26-201ENST00000384147 75 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA80D-201ENST00000384488 135 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-735P-201ENST00000410612 107 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 Y_RNA.630-201ENST00000411370 108 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA70.22-201ENST00000517160 124 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 MIR4305-201ENST00000583252 102 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 HSPE1P19-201ENST00000603327 295 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 MIR8070-201ENST00000616510 88 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 SEPT14P17-201ENST00000617978 177 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 MIR6841-201ENST00000637129 72 ntBASIC1.47□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA22.1-201ENST00000362701 134 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.116-201ENST00000363292 103 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 RNU4-16P-201ENST00000364737 141 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 SNORD12-201ENST00000391002 90 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-1190P-201ENST00000410811 104 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 RNA5SP144-201ENST00000410846 116 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-602P-201ENST00000411155 105 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 BTF3P4-201ENST00000418852 495 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 AL591704.2-201ENST00000421658 181 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 HMGN1P33-201ENST00000432945 451 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 MIR4264-201ENST00000583520 66 ntBASIC1.46□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.353-201ENST00000365440 108 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-1056P-201ENST00000383996 107 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.528-201ENST00000384575 108 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-613P-201ENST00000410412 108 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 RNU7-164P-201ENST00000459221 62 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 snoU13.18-201ENST00000459483 104 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 MIR4421-201ENST00000578133 69 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 AL512598.1-201ENST00000610158 273 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 MTND5P18-201ENST00000445624 1801 ntBASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
LIMCH1Q9UPQ0 MIR377-201ENST00000362145 69 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.298-201ENST00000364960 107 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 MIR489-201ENST00000384923 84 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-910P-201ENST00000390844 107 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-1064P-201ENST00000410626 104 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 POLR2J4-204ENST00000418424 324 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 AL359821.1-201ENST00000605519 182 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 MIR6516-201ENST00000630554 81 ntBASIC1.44□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.198-201ENST00000364013 98 ntBASIC1.43□□□□□ -2.18
LIMCH1Q9UPQ0 MIR759-201ENST00000390224 91 ntBASIC1.43□□□□□ -2.18
LIMCH1Q9UPQ0 MRPL35P3-201ENST00000421557 364 ntBASIC1.43□□□□□ -2.18
LIMCH1Q9UPQ0 AC090844.1-201ENST00000422019 156 ntBASIC1.43□□□□□ -2.18
LIMCH1Q9UPQ0 COX6CP6-201ENST00000490840 228 ntBASIC1.43□□□□□ -2.18
LIMCH1Q9UPQ0 TRMT112P2-201ENST00000512910 132 ntBASIC1.43□□□□□ -2.18
LIMCH1Q9UPQ0 SNORD79.1-201ENST00000516069 84 ntBASIC1.43□□□□□ -2.18
LIMCH1Q9UPQ0 SNORD115-2-201ENST00000362842 82 ntBASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 SNORD115-20-201ENST00000365099 82 ntBASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 MIR548A3-201ENST00000385297 97 ntBASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 RNU7-90P-201ENST00000459216 62 ntBASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 RNU7-95P-201ENST00000459222 64 ntBASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 RNU7-21P-201ENST00000459430 62 ntBASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.42□□□□□ -2.18
LIMCH1Q9UPQ0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.299-201ENST00000364973 94 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-1144P-201ENST00000384247 104 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 SNORA25-201ENST00000384384 134 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6-476P-201ENST00000384726 107 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.649-201ENST00000459077 103 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 RNU7-113P-201ENST00000459273 62 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 219 ms