Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AL078595.1-201ENST00000404458 226 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 RNA5SP261-201ENST00000410536 106 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 RNU7-185P-201ENST00000459215 60 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 RNA5SP436-201ENST00000516020 115 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 RNU6-1149P-201ENST00000516810 97 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 MRPS18CP4-201ENST00000535821 231 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 MIR6841-201ENST00000637129 72 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 MIR411-201ENST00000362239 96 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.75-201ENST00000362927 97 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.144-201ENST00000363521 113 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 RNU6-47P-201ENST00000383866 107 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 RNU6-1336P-201ENST00000383886 109 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 MIR938-201ENST00000401216 83 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 AC018659.1-201ENST00000551083 169 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.61□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.200-201ENST00000364018 102 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.435-201ENST00000384095 112 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 MIR125B2-201ENST00000385128 89 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 MT-TF-201ENST00000387314 71 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 MIR1257-201ENST00000408490 117 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 AC008608.1-201ENST00000603910 127 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 AL162730.1-201ENST00000605734 292 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 uc_338.17-201ENST00000619633 179 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 AC021613.1-201ENST00000623880 111 ntBASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.83-201ENST00000363005 113 ntBASIC0.59□□□□□ -2.31
CPSF3Q9UKF6 SNORA36.2-201ENST00000384004 127 ntBASIC0.59□□□□□ -2.31
CPSF3Q9UKF6 MIR92A1-201ENST00000385233 78 ntBASIC0.59□□□□□ -2.31
CPSF3Q9UKF6 AC092628.1-201ENST00000436250 252 ntBASIC0.59□□□□□ -2.31
CPSF3Q9UKF6 snoU13.18-201ENST00000459483 104 ntBASIC0.59□□□□□ -2.31
CPSF3Q9UKF6 RNU4-54P-201ENST00000516428 129 ntBASIC0.59□□□□□ -2.31
CPSF3Q9UKF6 AC009779.6-201ENST00000603972 165 ntBASIC0.59□□□□□ -2.31
CPSF3Q9UKF6 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 RNU7-102P-201ENST00000458948 62 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 RNU7-70P-201ENST00000516941 66 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 MIR3612-201ENST00000579753 87 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 MIR3152-201ENST00000579801 74 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 SNORD92-201ENST00000585078 85 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 AL662814.1-201ENST00000617364 121 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 MIR6513-201ENST00000621188 64 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 MTND5P32-201ENST00000560711 1802 ntBASIC0.58□□□□□ -2.32
CPSF3Q9UKF6 MIR18A-201ENST00000362310 71 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 RNA5SP347-201ENST00000362445 119 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 SNORA22.1-201ENST00000362701 134 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 SNORA25.7-201ENST00000364375 127 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 RNU6-945P-201ENST00000383947 107 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 SNORA20-201ENST00000384662 132 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1237P-201ENST00000384777 107 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 RNU7-156P-201ENST00000517214 74 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 AC130289.1-201ENST00000577321 73 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 MIR4431-201ENST00000579990 94 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 Z83818.1-201ENST00000603584 150 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1020P-201ENST00000363684 107 ntBASIC0.56□□□□□ -2.32
CPSF3Q9UKF6 RNU4-16P-201ENST00000364737 141 ntBASIC0.56□□□□□ -2.32
CPSF3Q9UKF6 RNU6-364P-201ENST00000384387 107 ntBASIC0.56□□□□□ -2.32
CPSF3Q9UKF6 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.56□□□□□ -2.32
CPSF3Q9UKF6 AC090897.1-201ENST00000580909 226 ntBASIC0.56□□□□□ -2.32
CPSF3Q9UKF6 MIR6515-201ENST00000619843 57 ntBASIC0.56□□□□□ -2.32
CPSF3Q9UKF6 Y_RNA.521-201ENST00000384560 114 ntBASIC0.55□□□□□ -2.32
CPSF3Q9UKF6 MIR140-201ENST00000385282 100 ntBASIC0.55□□□□□ -2.32
CPSF3Q9UKF6 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.55□□□□□ -2.32
CPSF3Q9UKF6 RNA5SP237-201ENST00000410414 113 ntBASIC0.55□□□□□ -2.32
CPSF3Q9UKF6 AC098934.3-201ENST00000430450 190 ntBASIC0.55□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1219P-201ENST00000516143 112 ntBASIC0.55□□□□□ -2.32
CPSF3Q9UKF6 Y_RNA.52-201ENST00000362760 96 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 Y_RNA.274-201ENST00000364714 101 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 Y_RNA.393-201ENST00000383936 102 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-768P-201ENST00000384683 107 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 SNORD100-201ENST00000408573 76 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-447P-201ENST00000410293 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1118P-201ENST00000410382 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1076P-201ENST00000410397 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-355P-201ENST00000410427 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-791P-201ENST00000410467 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-705P-201ENST00000410601 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1100P-201ENST00000410691 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-860P-201ENST00000410860 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1217P-201ENST00000411276 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-785P-201ENST00000411324 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1258P-201ENST00000516911 111 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 AC022559.1-201ENST00000520905 205 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 AC141846.1-201ENST00000568348 142 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 U6.90-201ENST00000614007 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 U6.70-201ENST00000620287 104 ntBASIC0.54□□□□□ -2.32
CPSF3Q9UKF6 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.32
CPSF3Q9UKF6 RNU6-1082P-201ENST00000364574 107 ntBASIC0.53□□□□□ -2.32
CPSF3Q9UKF6 MIR489-201ENST00000384923 84 ntBASIC0.53□□□□□ -2.32
CPSF3Q9UKF6 MIR936-201ENST00000401264 98 ntBASIC0.53□□□□□ -2.32
CPSF3Q9UKF6 SNORD93-201ENST00000408813 74 ntBASIC0.53□□□□□ -2.32
CPSF3Q9UKF6 MIR8066-201ENST00000617280 78 ntBASIC0.53□□□□□ -2.32
CPSF3Q9UKF6 Y_RNA.233-201ENST00000364407 101 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.489-201ENST00000384410 101 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 U8.15-201ENST00000390947 134 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 188 ms