Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR518A1-201ENST00000385068 85 ntBASIC0.36□□□□□ -2.35
CHMP4AQ9BY43 MT-TW-201ENST00000387382 68 ntBASIC0.36□□□□□ -2.35
CHMP4AQ9BY43 AC022523.2-201ENST00000561045 150 ntBASIC0.36□□□□□ -2.35
CHMP4AQ9BY43 SNORA25.18-201ENST00000607153 114 ntBASIC0.36□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.262-201ENST00000364641 102 ntBASIC0.35□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.567-201ENST00000384736 106 ntBASIC0.35□□□□□ -2.35
CHMP4AQ9BY43 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.35□□□□□ -2.35
CHMP4AQ9BY43 MIR4282-201ENST00000583613 67 ntBASIC0.35□□□□□ -2.35
CHMP4AQ9BY43 AL662814.1-201ENST00000617364 121 ntBASIC0.35□□□□□ -2.35
CHMP4AQ9BY43 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.35□□□□□ -2.35
CHMP4AQ9BY43 MIR103A1-201ENST00000362165 78 ntBASIC0.34□□□□□ -2.36
CHMP4AQ9BY43 RNU6-403P-201ENST00000363163 104 ntBASIC0.34□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.422-201ENST00000384054 114 ntBASIC0.34□□□□□ -2.36
CHMP4AQ9BY43 AL121914.1-201ENST00000450188 156 ntBASIC0.34□□□□□ -2.36
CHMP4AQ9BY43 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
CHMP4AQ9BY43 SNORA62.5-201ENST00000516634 120 ntBASIC0.34□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.720-201ENST00000517166 92 ntBASIC0.34□□□□□ -2.36
CHMP4AQ9BY43 RNU6-349P-201ENST00000362402 107 ntBASIC0.33□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.617-201ENST00000410920 90 ntBASIC0.33□□□□□ -2.36
CHMP4AQ9BY43 AP003072.1-201ENST00000531740 145 ntBASIC0.33□□□□□ -2.36
CHMP4AQ9BY43 AC133485.4-201ENST00000561835 220 ntBASIC0.33□□□□□ -2.36
CHMP4AQ9BY43 RNU6-103P-201ENST00000363686 107 ntBASIC0.32□□□□□ -2.36
CHMP4AQ9BY43 RNU6-1292P-201ENST00000383856 107 ntBASIC0.32□□□□□ -2.36
CHMP4AQ9BY43 RNU6-469P-201ENST00000516253 101 ntBASIC0.32□□□□□ -2.36
CHMP4AQ9BY43 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.32□□□□□ -2.36
CHMP4AQ9BY43 MIR5093-201ENST00000583199 100 ntBASIC0.32□□□□□ -2.36
CHMP4AQ9BY43 AC006504.6-201ENST00000590142 199 ntBASIC0.32□□□□□ -2.36
CHMP4AQ9BY43 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.11-201ENST00000362375 109 ntBASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.277-201ENST00000364754 102 ntBASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.574-201ENST00000384766 95 ntBASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 SNRPGP12-201ENST00000449481 213 ntBASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 AL365205.2-201ENST00000594586 68 ntBASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 MIR8066-201ENST00000617280 78 ntBASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.31□□□□□ -2.36
CHMP4AQ9BY43 MIR330-201ENST00000362196 94 ntBASIC0.3□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.13-201ENST00000362403 112 ntBASIC0.3□□□□□ -2.36
CHMP4AQ9BY43 SNORD44.1-201ENST00000363202 61 ntBASIC0.3□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.430-201ENST00000384081 110 ntBASIC0.3□□□□□ -2.36
CHMP4AQ9BY43 SNORA8.2-201ENST00000384372 139 ntBASIC0.3□□□□□ -2.36
CHMP4AQ9BY43 MIR4643-201ENST00000577473 78 ntBASIC0.3□□□□□ -2.36
CHMP4AQ9BY43 AL442067.1-201ENST00000613261 223 ntBASIC0.3□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.42-201ENST00000362660 108 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 SNORA22.1-201ENST00000362701 134 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.352-201ENST00000365439 102 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 SNORA72.6-201ENST00000384520 129 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 MIR644A-201ENST00000385262 94 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 U8.15-201ENST00000390947 134 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 SNORD116-25-201ENST00000516517 92 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 AC141846.1-201ENST00000568348 142 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 MIR4744-201ENST00000581563 82 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 MIR8087-201ENST00000612745 78 ntBASIC0.29□□□□□ -2.36
CHMP4AQ9BY43 RNA5SP62-201ENST00000363457 110 ntBASIC0.28□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.292-201ENST00000364904 97 ntBASIC0.28□□□□□ -2.36
CHMP4AQ9BY43 RNU4-43P-201ENST00000410628 137 ntBASIC0.28□□□□□ -2.36
CHMP4AQ9BY43 AC021613.1-201ENST00000623880 111 ntBASIC0.28□□□□□ -2.36
CHMP4AQ9BY43 Y_RNA.76-201ENST00000362931 109 ntBASIC0.27□□□□□ -2.37
CHMP4AQ9BY43 SNORD118-201ENST00000363593 134 ntBASIC0.27□□□□□ -2.37
CHMP4AQ9BY43 RNA5SP457-201ENST00000363657 124 ntBASIC0.27□□□□□ -2.37
CHMP4AQ9BY43 Y_RNA.396-201ENST00000383949 103 ntBASIC0.27□□□□□ -2.37
CHMP4AQ9BY43 RNU6-472P-201ENST00000384299 107 ntBASIC0.27□□□□□ -2.37
CHMP4AQ9BY43 RNY3P16-201ENST00000516338 101 ntBASIC0.27□□□□□ -2.37
CHMP4AQ9BY43 MIR378D2-201ENST00000580636 98 ntBASIC0.27□□□□□ -2.37
CHMP4AQ9BY43 RNU4-16P-201ENST00000364737 141 ntBASIC0.26□□□□□ -2.37
CHMP4AQ9BY43 Y_RNA.308-201ENST00000365043 101 ntBASIC0.26□□□□□ -2.37
CHMP4AQ9BY43 RNU6-1160P-201ENST00000384546 104 ntBASIC0.26□□□□□ -2.37
CHMP4AQ9BY43 AP003327.1-201ENST00000529684 127 ntBASIC0.26□□□□□ -2.37
CHMP4AQ9BY43 MIR6082-201ENST00000613604 109 ntBASIC0.26□□□□□ -2.37
CHMP4AQ9BY43 MIR4315-1-201ENST00000636800 73 ntBASIC0.26□□□□□ -2.37
CHMP4AQ9BY43 MIR4315-2-201ENST00000640925 73 ntBASIC0.26□□□□□ -2.37
CHMP4AQ9BY43 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 SNORA18-201ENST00000384416 132 ntBASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 AL358176.2-201ENST00000425769 204 ntBASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 AL512326.2-201ENST00000426359 151 ntBASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 RNU6-135P-201ENST00000516769 101 ntBASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 MIR4491-201ENST00000581087 68 ntBASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 RNU2-4P-201ENST00000606190 192 ntBASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.25□□□□□ -2.37
CHMP4AQ9BY43 Y_RNA.85-201ENST00000363014 111 ntBASIC0.24□□□□□ -2.37
CHMP4AQ9BY43 RNU6-578P-201ENST00000390980 103 ntBASIC0.24□□□□□ -2.37
CHMP4AQ9BY43 RNU6-493P-201ENST00000391321 108 ntBASIC0.24□□□□□ -2.37
CHMP4AQ9BY43 RNA5SP127-201ENST00000411051 133 ntBASIC0.24□□□□□ -2.37
CHMP4AQ9BY43 AC073261.1-201ENST00000429409 121 ntBASIC0.24□□□□□ -2.37
CHMP4AQ9BY43 Y_RNA.797-201ENST00000515977 94 ntBASIC0.24□□□□□ -2.37
CHMP4AQ9BY43 MIR6841-201ENST00000637129 72 ntBASIC0.24□□□□□ -2.37
CHMP4AQ9BY43 SNORA36.1-201ENST00000363424 132 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 MIR606-201ENST00000384851 96 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 Y_RNA.588-201ENST00000391254 102 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 RNU2-38P-201ENST00000410856 79 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 RNU6-1149P-201ENST00000516810 97 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 AC008737.2-201ENST00000599446 118 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 AC023932.2-201ENST00000603176 175 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.23□□□□□ -2.37
CHMP4AQ9BY43 Y_RNA.115-201ENST00000363272 98 ntBASIC0.22□□□□□ -2.37
CHMP4AQ9BY43 RNU6-978P-201ENST00000364371 103 ntBASIC0.22□□□□□ -2.37
CHMP4AQ9BY43 RNU6-716P-201ENST00000365621 103 ntBASIC0.22□□□□□ -2.37
CHMP4AQ9BY43 RNU6-949P-201ENST00000384040 107 ntBASIC0.22□□□□□ -2.37
CHMP4AQ9BY43 Y_RNA.518-201ENST00000384552 113 ntBASIC0.22□□□□□ -2.37
CHMP4AQ9BY43 MIR548F4-201ENST00000408515 105 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms