Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 MIR6866-201ENST00000638146 69 ntBASIC0.61□□□□□ -2.31
RSPO3Q9BXY4 RNU6-508P-201ENST00000363231 103 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 Y_RNA.150-201ENST00000363562 102 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 Y_RNA.521-201ENST00000384560 114 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 SNORD12-201ENST00000391002 90 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 RNU6-394P-201ENST00000410735 107 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 RNA5SP127-201ENST00000411051 133 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 RNU7-90P-201ENST00000459216 62 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 Y_RNA.700-201ENST00000516806 100 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 RNU6-1149P-201ENST00000516810 97 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 RNU2-60P-201ENST00000517290 128 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 AC091932.4-201ENST00000623386 200 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 Z97988.1-201ENST00000637697 135 ntBASIC0.6□□□□□ -2.31
RSPO3Q9BXY4 RNU6-580P-201ENST00000365159 107 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU6-1130P-201ENST00000365434 107 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU6-205P-201ENST00000390858 107 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU6-907P-201ENST00000390924 102 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU6-239P-201ENST00000390990 99 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU6-613P-201ENST00000410412 108 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU6-602P-201ENST00000411155 105 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU7-96P-201ENST00000459535 64 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 AC107027.2-201ENST00000512197 115 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 Y_RNA.662-201ENST00000516028 97 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 Y_RNA.681-201ENST00000516445 113 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU11-2P-201ENST00000516898 142 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 AC004812.1-201ENST00000540773 146 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 RNU6-94P-201ENST00000607728 107 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 FTX_2.1-201ENST00000618816 94 ntBASIC0.59□□□□□ -2.31
RSPO3Q9BXY4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 RNU6-369P-201ENST00000362515 102 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.52-201ENST00000362760 96 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 RNA5SP499-201ENST00000363982 119 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 SNORA25.7-201ENST00000364375 127 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.251-201ENST00000364551 99 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.272-201ENST00000364696 102 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 RNU6-396P-201ENST00000365369 105 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.497-201ENST00000384447 98 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 SNORD12C-201ENST00000386307 89 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 MIR548I3-201ENST00000408378 149 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 RNU6-733P-201ENST00000410759 104 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 RNA5SP236-201ENST00000516169 116 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 MIR4711-201ENST00000578274 70 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 AC104465.1-201ENST00000611365 139 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 MIR6740-201ENST00000618268 113 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 MIR6717-201ENST00000622747 73 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 AL596211.1-201ENST00000569873 2277 ntBASIC0.58□□□□□ -2.32
RSPO3Q9BXY4 MIR330-201ENST00000362196 94 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.85-201ENST00000363014 111 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 SNORD113.3-201ENST00000364630 78 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.337-201ENST00000365312 102 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 RNU6-1335P-201ENST00000365426 107 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.357-201ENST00000365487 109 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 RNU6-804P-201ENST00000384286 107 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 RNU6-886P-201ENST00000384319 105 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 MIR608-201ENST00000384820 100 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 MIR508-201ENST00000384857 115 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 AC015818.7-201ENST00000428754 109 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 AC087499.7-201ENST00000441958 109 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 MIR2115-201ENST00000516657 100 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 RNU7-53P-201ENST00000516705 60 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 RNU6-1258P-201ENST00000516911 111 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 RNU6-182P-201ENST00000516970 105 ntBASIC0.57□□□□□ -2.32
RSPO3Q9BXY4 RNU6-349P-201ENST00000362402 107 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.168-201ENST00000363740 102 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 SNORA1.1-201ENST00000364671 133 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 SNORA2B-201ENST00000384583 137 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 MT-TN-201ENST00000387400 73 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 RNU7-197P-201ENST00000458836 62 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 MTND5P41-201ENST00000517498 206 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 MIR6844-201ENST00000637122 62 ntBASIC0.56□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 SNORD114-24-201ENST00000365029 72 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 SNORD38B-201ENST00000384690 67 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 RNU6-1319P-201ENST00000390855 104 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 RNU6-747P-201ENST00000390928 104 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 RNU6-241P-201ENST00000391148 104 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 SNORA75.5-201ENST00000391291 81 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 SNORD111-201ENST00000408139 94 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 RNU6-177P-201ENST00000411257 104 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 SNORD83.1-201ENST00000411362 77 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 RNU7-80P-201ENST00000459562 61 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 RNA5SP121-201ENST00000516537 101 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.686-201ENST00000516548 134 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 MIR3144-201ENST00000579460 79 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 DNAJC19P2-201ENST00000593340 302 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 SNORD38B-202ENST00000625943 69 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 MIR6841-201ENST00000637129 72 ntBASIC0.55□□□□□ -2.32
RSPO3Q9BXY4 MIR377-201ENST00000362145 69 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 MIR302B-201ENST00000362188 73 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.8-201ENST00000362353 102 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 RNU6-309P-201ENST00000364573 106 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 RNU4-16P-201ENST00000364737 141 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 RNU4-11P-201ENST00000365287 132 ntBASIC0.54□□□□□ -2.32
RSPO3Q9BXY4 Y_RNA.398-201ENST00000383952 99 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms