Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU7-90P-201ENST00000459216 62 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 RNU11-2P-201ENST00000516898 142 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 MIR6740-201ENST00000618268 113 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 AC021613.1-201ENST00000623880 111 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 MIR6841-201ENST00000637129 72 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 Y_RNA.4-201ENST00000362333 112 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNY1P10-201ENST00000363268 113 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 Y_RNA.294-201ENST00000364916 102 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU1-36P-201ENST00000365130 165 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNY1P6-201ENST00000384193 109 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 Y_RNA.454-201ENST00000384224 113 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU6-1319P-201ENST00000390855 104 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU6-747P-201ENST00000390928 104 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU6-241P-201ENST00000391148 104 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU6-177P-201ENST00000411257 104 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU6-240P-201ENST00000516098 97 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU6-426P-201ENST00000516464 97 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 AC108081.1-201ENST00000604358 221 ntBASIC0.88□□□□□ -2.27
USP28Q96RU2 RNU6-774P-201ENST00000363238 107 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 RNU6-915P-201ENST00000364943 103 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 SNORD114-24-201ENST00000365029 72 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 Y_RNA.420-201ENST00000384043 110 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 RNU5E-3P-201ENST00000515913 68 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 Y_RNA.690-201ENST00000516603 95 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 RNU6-113P-201ENST00000516653 101 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.87□□□□□ -2.27
USP28Q96RU2 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.87□□□□□ -2.27
USP28Q96RU2 AC211469.2-201ENST00000605461 205 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 AC106800.4-201ENST00000614905 153 ntBASIC0.87□□□□□ -2.27
USP28Q96RU2 Y_RNA.171-201ENST00000363760 102 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 SNORD38B-201ENST00000384690 67 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 MIR146A-201ENST00000385201 99 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 MIR513C-201ENST00000401352 84 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 RPS3AP1-201ENST00000413190 320 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 RNU7-62P-201ENST00000458856 62 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 PDCD5P2-201ENST00000507570 312 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 MIR548X2-201ENST00000579776 100 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 SNORD38B-202ENST00000625943 69 ntBASIC0.86□□□□□ -2.27
USP28Q96RU2 SNORA22.1-201ENST00000362701 134 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 Y_RNA.120-201ENST00000363304 110 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 Y_RNA.168-201ENST00000363740 102 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 SNORD113.3-201ENST00000364630 78 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 RNU6-580P-201ENST00000365159 107 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 RNU6-690P-201ENST00000365242 106 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 MIR588-201ENST00000384900 83 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 MT-TN-201ENST00000387400 73 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 RNA5SP144-201ENST00000410846 116 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 SNORD83.1-201ENST00000411362 77 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 ACA64.5-201ENST00000516207 127 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 RNU2-35P-201ENST00000516446 142 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 Y_RNA.757-201ENST00000578934 114 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 MIR4264-201ENST00000583520 66 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 AP000753.3-201ENST00000604083 169 ntBASIC0.85□□□□□ -2.27
USP28Q96RU2 AC010332.2-201ENST00000613083 1904 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 MIR377-201ENST00000362145 69 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 RNU6-369P-201ENST00000362515 102 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 RNU6-1335P-201ENST00000365426 107 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 Y_RNA.366-201ENST00000365540 102 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 Y_RNA.430-201ENST00000384081 110 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 RNU6-342P-201ENST00000384521 104 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 RNU6-1237P-201ENST00000384777 107 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 MIR200A-201ENST00000384875 90 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 AL603914.1-201ENST00000401964 204 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 IGKV1-22-201ENST00000524313 326 ntBASIC0.84□□□□□ -2.27
USP28Q96RU2 Y_RNA.470-201ENST00000384307 117 ntBASIC0.83□□□□□ -2.28
USP28Q96RU2 Y_RNA.488-201ENST00000384403 102 ntBASIC0.83□□□□□ -2.28
USP28Q96RU2 MIR942-201ENST00000401111 86 ntBASIC0.83□□□□□ -2.28
USP28Q96RU2 snoU13.2-201ENST00000459201 104 ntBASIC0.83□□□□□ -2.28
USP28Q96RU2 PSMC1P5-201ENST00000512850 177 ntBASIC0.83□□□□□ -2.28
USP28Q96RU2 MIR3133-201ENST00000583157 78 ntBASIC0.83□□□□□ -2.28
USP28Q96RU2 SNORD18B-201ENST00000365659 72 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 RNU6-1062P-201ENST00000383908 107 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 RNU6-187P-201ENST00000384139 106 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 MIR563-201ENST00000385080 79 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 SNORD111-201ENST00000408139 94 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 RNU6-1165P-201ENST00000410119 107 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 AL512326.2-201ENST00000426359 151 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 MTATP6P21-201ENST00000440681 189 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 AC113410.1-201ENST00000505029 247 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 MIR3121-201ENST00000579680 77 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 MIR6866-201ENST00000638146 69 ntBASIC0.82□□□□□ -2.28
USP28Q96RU2 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
USP28Q96RU2 MIR30D-201ENST00000362283 70 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 RNY1P5-201ENST00000383890 115 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 RNU7-123P-201ENST00000515911 60 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 RNA5SP102-201ENST00000516865 106 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 AP001328.1-201ENST00000528550 176 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 AC022523.2-201ENST00000561045 150 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 MIR3152-201ENST00000579801 74 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 MIR4305-201ENST00000583252 102 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 AC021443.1-201ENST00000604478 211 ntBASIC0.81□□□□□ -2.28
USP28Q96RU2 SNORA25.9-201ENST00000365087 128 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 SNORA18-201ENST00000384416 132 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 Y_RNA.568-201ENST00000384742 113 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 SNORD89-201ENST00000390981 114 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 RNU6-257P-201ENST00000410238 98 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms