Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MIR5197-201ENST00000583721 112 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 AL365205.2-201ENST00000594586 68 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 AL353765.1-201ENST00000605514 183 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 AC104465.1-201ENST00000611365 139 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 AC243829.6-201ENST00000612652 106 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 MIR6740-201ENST00000618268 113 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 RNU6-369P-201ENST00000362515 102 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 Y_RNA.200-201ENST00000364018 102 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 RNU6-934P-201ENST00000365154 107 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 VTRNA1-3-201ENST00000365645 89 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 Y_RNA.412-201ENST00000384001 104 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 MIR1827-201ENST00000408549 66 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 SNORD99-201ENST00000408612 74 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 Y_RNA.618-201ENST00000410949 107 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 RNU7-62P-201ENST00000458856 62 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 RNU6-1110P-201ENST00000516462 101 ntBASIC0.73□□□□□ -2.29
NPHP3Q7Z494 AL596211.1-201ENST00000569873 2277 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 MIR1-1-201ENST00000362147 71 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 MIR302B-201ENST00000362188 73 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 MIR411-201ENST00000362239 96 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 Y_RNA.83-201ENST00000363005 113 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 RNU6-275P-201ENST00000364910 107 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 RNU6-1292P-201ENST00000383856 107 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 RNU6-1336P-201ENST00000383886 109 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 RNU6-643P-201ENST00000384018 107 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 SNORD12C-201ENST00000386307 89 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 AC130289.1-201ENST00000577321 73 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 AC091932.4-201ENST00000623386 200 ntBASIC0.72□□□□□ -2.29
NPHP3Q7Z494 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.72□□□□□ -2.29
NPHP3Q7Z494 SNORA26.6-201ENST00000391256 115 ntBASIC0.71□□□□□ -2.3
NPHP3Q7Z494 AC113410.1-201ENST00000505029 247 ntBASIC0.71□□□□□ -2.3
NPHP3Q7Z494 RNA5SP476-201ENST00000516613 103 ntBASIC0.71□□□□□ -2.3
NPHP3Q7Z494 AC022559.1-201ENST00000520905 205 ntBASIC0.71□□□□□ -2.3
NPHP3Q7Z494 MIR6717-201ENST00000622747 73 ntBASIC0.71□□□□□ -2.3
NPHP3Q7Z494 MIR588-201ENST00000384900 83 ntBASIC0.7□□□□□ -2.3
NPHP3Q7Z494 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.7□□□□□ -2.3
NPHP3Q7Z494 MIR4771-2-201ENST00000577758 74 ntBASIC0.7□□□□□ -2.3
NPHP3Q7Z494 AC025627.3-201ENST00000582078 182 ntBASIC0.7□□□□□ -2.3
NPHP3Q7Z494 MIR4771-1-201ENST00000582617 74 ntBASIC0.7□□□□□ -2.3
NPHP3Q7Z494 AC009779.6-201ENST00000603972 165 ntBASIC0.7□□□□□ -2.3
NPHP3Q7Z494 AC010332.2-201ENST00000613083 1904 ntBASIC0.7□□□□□ -2.3
NPHP3Q7Z494 Y_RNA.75-201ENST00000362927 97 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 Y_RNA.274-201ENST00000364714 101 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 RNU6-597P-201ENST00000365620 102 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 SNORD105-201ENST00000386910 85 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 RNU7-80P-201ENST00000459562 61 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 MRPS18CP4-201ENST00000535821 231 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.69□□□□□ -2.3
NPHP3Q7Z494 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.69□□□□□ -2.3
NPHP3Q7Z494 AC020891.4-201ENST00000605745 93 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.69□□□□□ -2.3
NPHP3Q7Z494 HSBP1P2-201ENST00000299671 229 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 RNU6-379P-201ENST00000363813 104 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 Y_RNA.489-201ENST00000384410 101 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 snoU13.2-201ENST00000459201 104 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 RNU6-977P-201ENST00000516411 103 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 SCARNA15-202ENST00000516881 127 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 RNU6-1271P-201ENST00000517049 105 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 AL136317.1-201ENST00000612653 226 ntBASIC0.68□□□□□ -2.3
NPHP3Q7Z494 RNU6-1020P-201ENST00000363684 107 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 Y_RNA.188-201ENST00000363952 111 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 RNU6-110P-201ENST00000384508 104 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 MIR92A1-201ENST00000385233 78 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 AC114737.2-201ENST00000421583 173 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 COX6CP6-201ENST00000490840 228 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 RNU6-1219P-201ENST00000516143 112 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 RNU6-1149P-201ENST00000516810 97 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 AC011195.1-201ENST00000578177 177 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 AC078938.1-201ENST00000620993 318 ntBASIC0.67□□□□□ -2.3
NPHP3Q7Z494 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
NPHP3Q7Z494 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
NPHP3Q7Z494 Y_RNA.454-201ENST00000384224 113 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 Y_RNA.521-201ENST00000384560 114 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 RNU6-1237P-201ENST00000384777 107 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 MIR520F-201ENST00000384824 87 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 MIR624-201ENST00000385217 97 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 RNU6-1165P-201ENST00000410119 107 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 AC244098.3-201ENST00000424803 96 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 MIR4431-201ENST00000579990 94 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 MIR4676-201ENST00000583078 72 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 Z83818.1-201ENST00000603584 150 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 MTND5P32-201ENST00000560711 1802 ntBASIC0.66□□□□□ -2.3
NPHP3Q7Z494 SNORA25.7-201ENST00000364375 127 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 RNU6-1319P-201ENST00000390855 104 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 RNU6-747P-201ENST00000390928 104 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 RNU6-241P-201ENST00000391148 104 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 RNU6-177P-201ENST00000411257 104 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 RNU7-70P-201ENST00000516941 66 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 RNU6-388P-201ENST00000517012 105 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 RNU6-389P-201ENST00000517048 105 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 MIR4804-201ENST00000581683 73 ntBASIC0.65□□□□□ -2.3
NPHP3Q7Z494 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
NPHP3Q7Z494 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
NPHP3Q7Z494 Y_RNA.233-201ENST00000364407 101 ntBASIC0.64□□□□□ -2.31
NPHP3Q7Z494 RNU4-16P-201ENST00000364737 141 ntBASIC0.64□□□□□ -2.31
NPHP3Q7Z494 Y_RNA.297-201ENST00000364950 91 ntBASIC0.64□□□□□ -2.31
NPHP3Q7Z494 Y_RNA.435-201ENST00000384095 112 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms