Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RNU7-80P-201ENST00000459562 61 ntBASIC0.21□□□□□ -2.38
RFX4Q33E94 Y_RNA.720-201ENST00000517166 92 ntBASIC0.21□□□□□ -2.38
RFX4Q33E94 AP003072.1-201ENST00000531740 145 ntBASIC0.21□□□□□ -2.38
RFX4Q33E94 AC078938.1-201ENST00000620993 318 ntBASIC0.21□□□□□ -2.38
RFX4Q33E94 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
RFX4Q33E94 Y_RNA.13-201ENST00000362403 112 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 RNU6-978P-201ENST00000364371 103 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 RNU6-1327P-201ENST00000365302 105 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 RNU6-728P-201ENST00000365375 104 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 Y_RNA.396-201ENST00000383949 103 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 Y_RNA.567-201ENST00000384736 106 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 Y_RNA.574-201ENST00000384766 95 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 MIR1302-6-201ENST00000408466 90 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 RNA5SP237-201ENST00000410414 113 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 RNY3P16-201ENST00000516338 101 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 AC022523.2-201ENST00000561045 150 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 AC141846.1-201ENST00000568348 142 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 MIR3152-201ENST00000579801 74 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 U6.104-201ENST00000637979 90 ntBASIC0.2□□□□□ -2.38
RFX4Q33E94 Y_RNA.262-201ENST00000364641 102 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 Y_RNA.277-201ENST00000364754 102 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 MIR644A-201ENST00000385262 94 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 SCARNA15-202ENST00000516881 127 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 MIR4431-201ENST00000579990 94 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 AC021613.1-201ENST00000623880 111 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 AC010487.4-201ENST00000637027 61 ntBASIC0.19□□□□□ -2.38
RFX4Q33E94 SNORA22.1-201ENST00000362701 134 ntBASIC0.18□□□□□ -2.38
RFX4Q33E94 Y_RNA.326-201ENST00000365176 113 ntBASIC0.18□□□□□ -2.38
RFX4Q33E94 Y_RNA.352-201ENST00000365439 102 ntBASIC0.18□□□□□ -2.38
RFX4Q33E94 SNORA20-201ENST00000384662 132 ntBASIC0.18□□□□□ -2.38
RFX4Q33E94 Y_RNA.32-201ENST00000362589 110 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU6-403P-201ENST00000363163 104 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU6-103P-201ENST00000363686 107 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 Y_RNA.292-201ENST00000364904 97 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU6-1160P-201ENST00000384546 104 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU2-38P-201ENST00000410856 79 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU6-863P-201ENST00000515989 104 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU6-469P-201ENST00000516253 101 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU6-1258P-201ENST00000516911 111 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 RNU7-70P-201ENST00000516941 66 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 AP003327.1-201ENST00000529684 127 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 MIR4491-201ENST00000581087 68 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 MIR4744-201ENST00000581563 82 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 MIR6082-201ENST00000613604 109 ntBASIC0.17□□□□□ -2.38
RFX4Q33E94 Y_RNA.54-201ENST00000362766 105 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 RNA5SP62-201ENST00000363457 110 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 RNU6-1099P-201ENST00000363533 107 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 RNU4-16P-201ENST00000364737 141 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 Y_RNA.422-201ENST00000384054 114 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 MIR613-201ENST00000385248 95 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 AL121914.1-201ENST00000450188 156 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.16□□□□□ -2.38
RFX4Q33E94 MIR378D2-201ENST00000580636 98 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 RN7SL793P-201ENST00000583259 296 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 PVT1_3.1-201ENST00000620853 95 ntBASIC0.16□□□□□ -2.38
RFX4Q33E94 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.16□□□□□ -2.38
RFX4Q33E94 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
RFX4Q33E94 Y_RNA.393-201ENST00000383936 102 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 RNU6-815P-201ENST00000384080 113 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 SNORA18-201ENST00000384416 132 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 RNU6-578P-201ENST00000390980 103 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 AL512326.2-201ENST00000426359 151 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 SNORA31.14-201ENST00000516728 116 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 RNU6-1149P-201ENST00000516810 97 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 AL117187.1-201ENST00000555482 181 ntBASIC0.15□□□□□ -2.39
RFX4Q33E94 Y_RNA.11-201ENST00000362375 109 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 RNU6-349P-201ENST00000362402 107 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 RNY1P13-201ENST00000365030 105 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 Y_RNA.308-201ENST00000365043 101 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 RNU6-949P-201ENST00000384040 107 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 RNY1P4-201ENST00000384595 115 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 MIR489-201ENST00000384923 84 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 RNU6-493P-201ENST00000391321 108 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 SNORD116-25-201ENST00000516517 92 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 MTND5P34-201ENST00000568888 325 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 AC006504.6-201ENST00000590142 199 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 RNU2-4P-201ENST00000606190 192 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 MIR924-201ENST00000638017 53 ntBASIC0.14□□□□□ -2.39
RFX4Q33E94 Y_RNA.174-201ENST00000363781 105 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 RNY4P28-201ENST00000365281 93 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 RNU6-291P-201ENST00000384720 107 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 MIR606-201ENST00000384851 96 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 MIR624-201ENST00000385217 97 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 RNA5SP127-201ENST00000411051 133 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 RNU6-893P-201ENST00000458841 100 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 SNORD127-201ENST00000458892 86 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 SNORA25.16-201ENST00000516741 121 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 RNU6-135P-201ENST00000516769 101 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 RNA5SP268-201ENST00000516828 124 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 RNU6-765P-201ENST00000516916 99 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 Y_RNA.757-201ENST00000578934 114 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 MIR4308-201ENST00000580634 81 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 MIR7107-201ENST00000611489 80 ntBASIC0.13□□□□□ -2.39
RFX4Q33E94 MTND5P32-201ENST00000560711 1802 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 233.1 ms