Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR200A-201ENST00000384875 90 ntBASIC1.53□□□□□ -2.16
SF3A1Q15459 MIR588-201ENST00000384900 83 ntBASIC1.53□□□□□ -2.16
SF3A1Q15459 AC133485.4-201ENST00000561835 220 ntBASIC1.53□□□□□ -2.16
SF3A1Q15459 AC138907.4-201ENST00000570107 226 ntBASIC1.53□□□□□ -2.16
SF3A1Q15459 AC012676.2-201ENST00000619258 186 ntBASIC1.53□□□□□ -2.16
SF3A1Q15459 Y_RNA.343-201ENST00000365354 112 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 RNA5SP237-201ENST00000410414 113 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 AL022718.1-201ENST00000412004 84 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 RNU6-426P-201ENST00000516464 97 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 MIR4421-201ENST00000578133 69 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 AL157834.3-201ENST00000615543 103 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 MIR6740-201ENST00000618268 113 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 MIR6841-201ENST00000637129 72 ntBASIC1.52□□□□□ -2.17
SF3A1Q15459 RNU6-1237P-201ENST00000384777 107 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 MIR1276-201ENST00000408707 83 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 RPS29P28-201ENST00000446439 141 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 RNU1-123P-201ENST00000458950 160 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 RNA5SP272-201ENST00000516095 111 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 RNU6-346P-201ENST00000516288 111 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 Y_RNA.692-201ENST00000516627 105 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 RNU6-113P-201ENST00000516653 101 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 AC021443.1-201ENST00000604478 211 ntBASIC1.51□□□□□ -2.17
SF3A1Q15459 AC010332.2-201ENST00000613083 1904 ntBASIC1.5□□□□□ -2.17
SF3A1Q15459 RNA5SP144-201ENST00000410846 116 ntBASIC1.5□□□□□ -2.17
SF3A1Q15459 FABP5P4-201ENST00000437203 171 ntBASIC1.5□□□□□ -2.17
SF3A1Q15459 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.5□□□□□ -2.17
SF3A1Q15459 snoU13.2-201ENST00000459201 104 ntBASIC1.5□□□□□ -2.17
SF3A1Q15459 Y_RNA.651-201ENST00000459380 103 ntBASIC1.5□□□□□ -2.17
SF3A1Q15459 MIR6504-201ENST00000613520 61 ntBASIC1.5□□□□□ -2.17
SF3A1Q15459 SNORD114-24-201ENST00000365029 72 ntBASIC1.49□□□□□ -2.17
SF3A1Q15459 RNU6-1165P-201ENST00000410119 107 ntBASIC1.49□□□□□ -2.17
SF3A1Q15459 SNORD83.1-201ENST00000411362 77 ntBASIC1.49□□□□□ -2.17
SF3A1Q15459 POLR2J4-204ENST00000418424 324 ntBASIC1.49□□□□□ -2.17
SF3A1Q15459 snoU13.21-201ENST00000459368 105 ntBASIC1.49□□□□□ -2.17
SF3A1Q15459 snoU13.18-201ENST00000459483 104 ntBASIC1.49□□□□□ -2.17
SF3A1Q15459 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SF3A1Q15459 RNU6-580P-201ENST00000365159 107 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 RNY1P5-201ENST00000383890 115 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 MIR489-201ENST00000384923 84 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 RPL39P25-201ENST00000449384 154 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 RNU7-113P-201ENST00000459273 62 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 AC004223.1-201ENST00000479840 271 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 AC113410.1-201ENST00000505029 247 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 Y_RNA.757-201ENST00000578934 114 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 MIR4305-201ENST00000583252 102 ntBASIC1.48□□□□□ -2.17
SF3A1Q15459 Y_RNA.506-201ENST00000384494 102 ntBASIC1.47□□□□□ -2.17
SF3A1Q15459 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.47□□□□□ -2.17
SF3A1Q15459 RPS23P4-201ENST00000487908 423 ntBASIC1.47□□□□□ -2.17
SF3A1Q15459 AL353770.2-201ENST00000620024 78 ntBASIC1.47□□□□□ -2.17
SF3A1Q15459 Y_RNA.171-201ENST00000363760 102 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 RNU6-934P-201ENST00000365154 107 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 Y_RNA.366-201ENST00000365540 102 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 MIR100-201ENST00000385259 80 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 RNU7-164P-201ENST00000459221 62 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 MIR4771-2-201ENST00000577758 74 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 MIR4771-1-201ENST00000582617 74 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 uc_338.6-201ENST00000613544 171 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 AP001340.1-201ENST00000624405 217 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 AC091895.1-201ENST00000624494 256 ntBASIC1.46□□□□□ -2.18
SF3A1Q15459 Y_RNA.191-201ENST00000363972 113 ntBASIC1.45□□□□□ -2.18
SF3A1Q15459 SNORD89-201ENST00000390981 114 ntBASIC1.45□□□□□ -2.18
SF3A1Q15459 PDCD5P2-201ENST00000507570 312 ntBASIC1.45□□□□□ -2.18
SF3A1Q15459 U7.2-201ENST00000607576 63 ntBASIC1.45□□□□□ -2.18
SF3A1Q15459 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.45□□□□□ -2.18
SF3A1Q15459 SNORA18-201ENST00000384416 132 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 SNORA40.6-201ENST00000391153 128 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 AC015818.7-201ENST00000428754 109 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 AC087499.7-201ENST00000441958 109 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 MIR4452-201ENST00000583004 71 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 SNORA4-201ENST00000584302 138 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 MIR3660-201ENST00000584845 100 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 AL137067.1-201ENST00000615933 120 ntBASIC1.44□□□□□ -2.18
SF3A1Q15459 MIR1-1-201ENST00000362147 71 ntBASIC1.43□□□□□ -2.18
SF3A1Q15459 RNU6-774P-201ENST00000363238 107 ntBASIC1.43□□□□□ -2.18
SF3A1Q15459 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.43□□□□□ -2.18
SF3A1Q15459 RNA5SP33-201ENST00000516687 98 ntBASIC1.43□□□□□ -2.18
SF3A1Q15459 RNA5SP102-201ENST00000516865 106 ntBASIC1.43□□□□□ -2.18
SF3A1Q15459 RNU6-1258P-201ENST00000516911 111 ntBASIC1.43□□□□□ -2.18
SF3A1Q15459 AC108081.1-201ENST00000604358 221 ntBASIC1.43□□□□□ -2.18
SF3A1Q15459 Y_RNA.294-201ENST00000364916 102 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 RNU2-35P-201ENST00000516446 142 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 Y_RNA.703-201ENST00000516846 111 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 MIR3121-201ENST00000579680 77 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 MIR3133-201ENST00000583157 78 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 MIR6078-201ENST00000611069 100 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 AL136317.1-201ENST00000612653 226 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 AL662814.1-201ENST00000617364 121 ntBASIC1.42□□□□□ -2.18
SF3A1Q15459 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.41□□□□□ -2.18
SF3A1Q15459 Y_RNA.114-201ENST00000363265 113 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 RNU6-746P-201ENST00000384112 109 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 RNU6-342P-201ENST00000384521 104 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 MIR563-201ENST00000385080 79 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 MT-TF-201ENST00000387314 71 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 MIR548M-201ENST00000408260 86 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 MIR18B-201ENST00000454574 71 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 OR2A41P-201ENST00000473586 105 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 RNU7-123P-201ENST00000515911 60 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 AL078603.1-201ENST00000603824 313 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 AC023934.1-201ENST00000574529 2389 ntBASIC1.41□□□□□ -2.18
SF3A1Q15459 Y_RNA.568-201ENST00000384742 113 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms