Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL662814.1-201ENST00000617364 121 ntBASIC0.32□□□□□ -2.36
LIM2P55344 MIR6841-201ENST00000637129 72 ntBASIC0.32□□□□□ -2.36
LIM2P55344 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
LIM2P55344 MIRLET7D-201ENST00000362263 87 ntBASIC0.31□□□□□ -2.36
LIM2P55344 Y_RNA.149-201ENST00000363558 117 ntBASIC0.31□□□□□ -2.36
LIM2P55344 Y_RNA.515-201ENST00000384535 112 ntBASIC0.31□□□□□ -2.36
LIM2P55344 SNORA20-201ENST00000384662 132 ntBASIC0.31□□□□□ -2.36
LIM2P55344 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.31□□□□□ -2.36
LIM2P55344 SNORA68.3-201ENST00000515906 83 ntBASIC0.31□□□□□ -2.36
LIM2P55344 RNU6-863P-201ENST00000515989 104 ntBASIC0.31□□□□□ -2.36
LIM2P55344 RNA5SP480-201ENST00000516840 109 ntBASIC0.31□□□□□ -2.36
LIM2P55344 Y_RNA.76-201ENST00000362931 109 ntBASIC0.3□□□□□ -2.36
LIM2P55344 RNU6-978P-201ENST00000364371 103 ntBASIC0.3□□□□□ -2.36
LIM2P55344 Y_RNA.292-201ENST00000364904 97 ntBASIC0.3□□□□□ -2.36
LIM2P55344 Y_RNA.466-201ENST00000384294 113 ntBASIC0.3□□□□□ -2.36
LIM2P55344 Y_RNA.562-201ENST00000384695 113 ntBASIC0.3□□□□□ -2.36
LIM2P55344 MIR624-201ENST00000385217 97 ntBASIC0.3□□□□□ -2.36
LIM2P55344 SNORD58.1-201ENST00000391313 66 ntBASIC0.3□□□□□ -2.36
LIM2P55344 RNA5SP237-201ENST00000410414 113 ntBASIC0.3□□□□□ -2.36
LIM2P55344 RNA5SP127-201ENST00000411051 133 ntBASIC0.3□□□□□ -2.36
LIM2P55344 SNORD71-201ENST00000411292 86 ntBASIC0.3□□□□□ -2.36
LIM2P55344 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.3□□□□□ -2.36
LIM2P55344 RNU7-45P-201ENST00000459460 63 ntBASIC0.3□□□□□ -2.36
LIM2P55344 RNU7-70P-201ENST00000516941 66 ntBASIC0.3□□□□□ -2.36
LIM2P55344 MIR378D2-201ENST00000580636 98 ntBASIC0.3□□□□□ -2.36
LIM2P55344 Y_RNA.42-201ENST00000362660 108 ntBASIC0.29□□□□□ -2.36
LIM2P55344 Y_RNA.277-201ENST00000364754 102 ntBASIC0.29□□□□□ -2.36
LIM2P55344 Y_RNA.288-201ENST00000364854 92 ntBASIC0.29□□□□□ -2.36
LIM2P55344 RNA5SP117-201ENST00000365294 118 ntBASIC0.29□□□□□ -2.36
LIM2P55344 RNU6-1327P-201ENST00000365302 105 ntBASIC0.29□□□□□ -2.36
LIM2P55344 Y_RNA.396-201ENST00000383949 103 ntBASIC0.29□□□□□ -2.36
LIM2P55344 RNU6-578P-201ENST00000390980 103 ntBASIC0.29□□□□□ -2.36
LIM2P55344 SNORA40.8-201ENST00000411034 126 ntBASIC0.29□□□□□ -2.36
LIM2P55344 SNORD127-201ENST00000458892 86 ntBASIC0.29□□□□□ -2.36
LIM2P55344 MTND1P19-201ENST00000511780 315 ntBASIC0.29□□□□□ -2.36
LIM2P55344 RNU6-135P-201ENST00000516769 101 ntBASIC0.29□□□□□ -2.36
LIM2P55344 RNU6-765P-201ENST00000516916 99 ntBASIC0.29□□□□□ -2.36
LIM2P55344 Y_RNA.47-201ENST00000362697 108 ntBASIC0.28□□□□□ -2.36
LIM2P55344 RNY4P28-201ENST00000365281 93 ntBASIC0.28□□□□□ -2.36
LIM2P55344 RNU6-738P-201ENST00000384531 106 ntBASIC0.28□□□□□ -2.36
LIM2P55344 RNY1P4-201ENST00000384595 115 ntBASIC0.28□□□□□ -2.36
LIM2P55344 MIR193B-201ENST00000384907 83 ntBASIC0.28□□□□□ -2.36
LIM2P55344 MIR518A1-201ENST00000385068 85 ntBASIC0.28□□□□□ -2.36
LIM2P55344 RPL39P25-201ENST00000449384 154 ntBASIC0.28□□□□□ -2.36
LIM2P55344 AL121914.1-201ENST00000450188 156 ntBASIC0.28□□□□□ -2.36
LIM2P55344 RNA5SP94-201ENST00000516917 108 ntBASIC0.28□□□□□ -2.36
LIM2P55344 AC008737.2-201ENST00000599446 118 ntBASIC0.28□□□□□ -2.36
LIM2P55344 MIR8066-201ENST00000617280 78 ntBASIC0.28□□□□□ -2.36
LIM2P55344 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.28□□□□□ -2.36
LIM2P55344 AC021613.1-201ENST00000623880 111 ntBASIC0.28□□□□□ -2.36
LIM2P55344 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
LIM2P55344 AL596211.1-201ENST00000569873 2277 ntBASIC0.27□□□□□ -2.37
LIM2P55344 Y_RNA.54-201ENST00000362766 105 ntBASIC0.27□□□□□ -2.37
LIM2P55344 Y_RNA.478-201ENST00000384358 107 ntBASIC0.27□□□□□ -2.37
LIM2P55344 SNORD93-201ENST00000408813 74 ntBASIC0.27□□□□□ -2.37
LIM2P55344 RNU4-83P-201ENST00000410863 133 ntBASIC0.27□□□□□ -2.37
LIM2P55344 AL358176.2-201ENST00000425769 204 ntBASIC0.27□□□□□ -2.37
LIM2P55344 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
LIM2P55344 SNORA22.1-201ENST00000362701 134 ntBASIC0.26□□□□□ -2.37
LIM2P55344 RNU6-1099P-201ENST00000363533 107 ntBASIC0.26□□□□□ -2.37
LIM2P55344 RNA5SP517-201ENST00000364724 117 ntBASIC0.26□□□□□ -2.37
LIM2P55344 RNU6-679P-201ENST00000391003 106 ntBASIC0.26□□□□□ -2.37
LIM2P55344 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.26□□□□□ -2.37
LIM2P55344 RNU5E-9P-201ENST00000411164 104 ntBASIC0.26□□□□□ -2.37
LIM2P55344 SEPT7P4-201ENST00000437076 306 ntBASIC0.26□□□□□ -2.37
LIM2P55344 SCARNA15-202ENST00000516881 127 ntBASIC0.26□□□□□ -2.37
LIM2P55344 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.26□□□□□ -2.37
LIM2P55344 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
LIM2P55344 SNORD118-201ENST00000363593 134 ntBASIC0.25□□□□□ -2.37
LIM2P55344 Y_RNA.174-201ENST00000363781 105 ntBASIC0.25□□□□□ -2.37
LIM2P55344 RNU6-643P-201ENST00000384018 107 ntBASIC0.25□□□□□ -2.37
LIM2P55344 RNU6-949P-201ENST00000384040 107 ntBASIC0.25□□□□□ -2.37
LIM2P55344 RNU6-1011P-201ENST00000384668 107 ntBASIC0.25□□□□□ -2.37
LIM2P55344 RNU2-38P-201ENST00000410856 79 ntBASIC0.25□□□□□ -2.37
LIM2P55344 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.25□□□□□ -2.37
LIM2P55344 AC108740.1-201ENST00000498629 225 ntBASIC0.25□□□□□ -2.37
LIM2P55344 SNORA25.12-201ENST00000516202 82 ntBASIC0.25□□□□□ -2.37
LIM2P55344 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
LIM2P55344 AC141846.1-201ENST00000568348 142 ntBASIC0.25□□□□□ -2.37
LIM2P55344 MIR3678-201ENST00000578455 94 ntBASIC0.25□□□□□ -2.37
LIM2P55344 Y_RNA.20-201ENST00000362479 113 ntBASIC0.24□□□□□ -2.37
LIM2P55344 Y_RNA.459-201ENST00000384251 102 ntBASIC0.24□□□□□ -2.37
LIM2P55344 U8.15-201ENST00000390947 134 ntBASIC0.24□□□□□ -2.37
LIM2P55344 MIR1302-3-201ENST00000408128 138 ntBASIC0.24□□□□□ -2.37
LIM2P55344 RNU6-1086P-201ENST00000410930 100 ntBASIC0.24□□□□□ -2.37
LIM2P55344 Y_RNA.797-201ENST00000515977 94 ntBASIC0.24□□□□□ -2.37
LIM2P55344 RNU6-469P-201ENST00000516253 101 ntBASIC0.24□□□□□ -2.37
LIM2P55344 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
LIM2P55344 AC022523.2-201ENST00000561045 150 ntBASIC0.24□□□□□ -2.37
LIM2P55344 MIR1273G-201ENST00000577677 100 ntBASIC0.24□□□□□ -2.37
LIM2P55344 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.24□□□□□ -2.37
LIM2P55344 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.23□□□□□ -2.37
LIM2P55344 SNORD44.1-201ENST00000363202 61 ntBASIC0.23□□□□□ -2.37
LIM2P55344 SNORA25.7-201ENST00000364375 127 ntBASIC0.23□□□□□ -2.37
LIM2P55344 RNU6-275P-201ENST00000364910 107 ntBASIC0.23□□□□□ -2.37
LIM2P55344 Y_RNA.308-201ENST00000365043 101 ntBASIC0.23□□□□□ -2.37
LIM2P55344 RNU6-597P-201ENST00000365620 102 ntBASIC0.23□□□□□ -2.37
LIM2P55344 SNORA8.2-201ENST00000384372 139 ntBASIC0.23□□□□□ -2.37
LIM2P55344 RNY3P16-201ENST00000516338 101 ntBASIC0.23□□□□□ -2.37
LIM2P55344 RNU2-4P-201ENST00000606190 192 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 234.8 ms