Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MIR764-201ENST00000390811 85 ntBASIC1.23□□□□□ -2.21
SOX2P48431 RNU6-613P-201ENST00000410412 108 ntBASIC1.23□□□□□ -2.21
SOX2P48431 RNU2-51P-201ENST00000410708 197 ntBASIC1.23□□□□□ -2.21
SOX2P48431 AL591704.2-201ENST00000421658 181 ntBASIC1.23□□□□□ -2.21
SOX2P48431 AL512326.2-201ENST00000426359 151 ntBASIC1.23□□□□□ -2.21
SOX2P48431 AC244023.1-201ENST00000426884 112 ntBASIC1.23□□□□□ -2.21
SOX2P48431 SNORA70.22-201ENST00000517160 124 ntBASIC1.23□□□□□ -2.21
SOX2P48431 SNORA31.24-201ENST00000517232 57 ntBASIC1.23□□□□□ -2.21
SOX2P48431 AC242498.1-201ENST00000604134 111 ntBASIC1.23□□□□□ -2.21
SOX2P48431 MIR3914-2-201ENST00000637339 95 ntBASIC1.23□□□□□ -2.21
SOX2P48431 SNORD115-2-201ENST00000362842 82 ntBASIC1.22□□□□□ -2.21
SOX2P48431 Y_RNA.213-201ENST00000364178 111 ntBASIC1.22□□□□□ -2.21
SOX2P48431 SNORD115-20-201ENST00000365099 82 ntBASIC1.22□□□□□ -2.21
SOX2P48431 RNA5SP190-201ENST00000365222 118 ntBASIC1.22□□□□□ -2.21
SOX2P48431 Y_RNA.330-201ENST00000365230 109 ntBASIC1.22□□□□□ -2.21
SOX2P48431 SNORD26-201ENST00000384147 75 ntBASIC1.22□□□□□ -2.21
SOX2P48431 SNORD12C-201ENST00000386307 89 ntBASIC1.22□□□□□ -2.21
SOX2P48431 SNORA75.2-201ENST00000391138 150 ntBASIC1.22□□□□□ -2.21
SOX2P48431 SNORA75.3-201ENST00000391231 150 ntBASIC1.22□□□□□ -2.21
SOX2P48431 Y_RNA.630-201ENST00000411370 108 ntBASIC1.22□□□□□ -2.21
SOX2P48431 RNA5SP33-201ENST00000516687 98 ntBASIC1.22□□□□□ -2.21
SOX2P48431 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.22□□□□□ -2.21
SOX2P48431 U6.95-201ENST00000636931 70 ntBASIC1.22□□□□□ -2.21
SOX2P48431 MTND5P18-201ENST00000445624 1801 ntBASIC1.22□□□□□ -2.21
SOX2P48431 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SOX2P48431 MIR377-201ENST00000362145 69 ntBASIC1.21□□□□□ -2.22
SOX2P48431 Y_RNA.198-201ENST00000364013 98 ntBASIC1.21□□□□□ -2.22
SOX2P48431 RNU6-654P-201ENST00000364373 107 ntBASIC1.21□□□□□ -2.22
SOX2P48431 Y_RNA.299-201ENST00000364973 94 ntBASIC1.21□□□□□ -2.22
SOX2P48431 Y_RNA.363-201ENST00000365529 113 ntBASIC1.21□□□□□ -2.22
SOX2P48431 RNU6-205P-201ENST00000390858 107 ntBASIC1.21□□□□□ -2.22
SOX2P48431 RNA5SP247-201ENST00000411181 105 ntBASIC1.21□□□□□ -2.22
SOX2P48431 MRPL35P3-201ENST00000421557 364 ntBASIC1.21□□□□□ -2.22
SOX2P48431 AL603825.1-201ENST00000438481 80 ntBASIC1.21□□□□□ -2.22
SOX2P48431 SNORD13-201ENST00000459299 104 ntBASIC1.21□□□□□ -2.22
SOX2P48431 AL359881.1-201ENST00000602916 267 ntBASIC1.21□□□□□ -2.22
SOX2P48431 RNA5SP327-201ENST00000362494 101 ntBASIC1.2□□□□□ -2.22
SOX2P48431 RNA5SP205-201ENST00000364653 136 ntBASIC1.2□□□□□ -2.22
SOX2P48431 RNU6-60P-201ENST00000364792 103 ntBASIC1.2□□□□□ -2.22
SOX2P48431 Y_RNA.470-201ENST00000384307 117 ntBASIC1.2□□□□□ -2.22
SOX2P48431 SNORA22C-201ENST00000384614 134 ntBASIC1.2□□□□□ -2.22
SOX2P48431 MIR222-201ENST00000384992 110 ntBASIC1.2□□□□□ -2.22
SOX2P48431 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.2□□□□□ -2.22
SOX2P48431 snoU13.2-201ENST00000459201 104 ntBASIC1.2□□□□□ -2.22
SOX2P48431 RNU7-21P-201ENST00000459430 62 ntBASIC1.2□□□□□ -2.22
SOX2P48431 RNU6-1053P-201ENST00000515930 101 ntBASIC1.2□□□□□ -2.22
SOX2P48431 SNORD79.1-201ENST00000516069 84 ntBASIC1.2□□□□□ -2.22
SOX2P48431 AC022523.2-201ENST00000561045 150 ntBASIC1.2□□□□□ -2.22
SOX2P48431 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.2□□□□□ -2.22
SOX2P48431 MIR548AI-201ENST00000579940 88 ntBASIC1.2□□□□□ -2.22
SOX2P48431 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SOX2P48431 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
SOX2P48431 SNORA18-201ENST00000384416 132 ntBASIC1.19□□□□□ -2.22
SOX2P48431 Y_RNA.563-201ENST00000384707 108 ntBASIC1.19□□□□□ -2.22
SOX2P48431 RNU6-1104P-201ENST00000384723 104 ntBASIC1.19□□□□□ -2.22
SOX2P48431 MIR588-201ENST00000384900 83 ntBASIC1.19□□□□□ -2.22
SOX2P48431 SNORD12-201ENST00000391002 90 ntBASIC1.19□□□□□ -2.22
SOX2P48431 MIR548I2-201ENST00000408348 149 ntBASIC1.19□□□□□ -2.22
SOX2P48431 RNA5SP95-201ENST00000410319 137 ntBASIC1.19□□□□□ -2.22
SOX2P48431 RNA5SP237-201ENST00000410414 113 ntBASIC1.19□□□□□ -2.22
SOX2P48431 RNU4-69P-201ENST00000410677 143 ntBASIC1.19□□□□□ -2.22
SOX2P48431 RNU7-62P-201ENST00000458856 62 ntBASIC1.19□□□□□ -2.22
SOX2P48431 RPS23P4-201ENST00000487908 423 ntBASIC1.19□□□□□ -2.22
SOX2P48431 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.19□□□□□ -2.22
SOX2P48431 AL645939.4-201ENST00000604495 135 ntBASIC1.19□□□□□ -2.22
SOX2P48431 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.18□□□□□ -2.22
SOX2P48431 Y_RNA.168-201ENST00000363740 102 ntBASIC1.18□□□□□ -2.22
SOX2P48431 SNORA25-201ENST00000384384 134 ntBASIC1.18□□□□□ -2.22
SOX2P48431 SNORA2B-201ENST00000384583 137 ntBASIC1.18□□□□□ -2.22
SOX2P48431 RNU6-1237P-201ENST00000384777 107 ntBASIC1.18□□□□□ -2.22
SOX2P48431 MIR758-201ENST00000390227 88 ntBASIC1.18□□□□□ -2.22
SOX2P48431 RNU7-90P-201ENST00000459216 62 ntBASIC1.18□□□□□ -2.22
SOX2P48431 MIR3163-201ENST00000581592 73 ntBASIC1.18□□□□□ -2.22
SOX2P48431 MIR548AE2-201ENST00000583456 67 ntBASIC1.18□□□□□ -2.22
SOX2P48431 SNORD113.3-201ENST00000364630 78 ntBASIC1.17□□□□□ -2.22
SOX2P48431 RNU6-342P-201ENST00000384521 104 ntBASIC1.17□□□□□ -2.22
SOX2P48431 MIR150-201ENST00000385048 84 ntBASIC1.17□□□□□ -2.22
SOX2P48431 SNORD33.1-201ENST00000516213 88 ntBASIC1.17□□□□□ -2.22
SOX2P48431 AC068338.1-201ENST00000565567 176 ntBASIC1.17□□□□□ -2.22
SOX2P48431 MIR6740-201ENST00000618268 113 ntBASIC1.17□□□□□ -2.22
SOX2P48431 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.16□□□□□ -2.22
SOX2P48431 RNU6-580P-201ENST00000365159 107 ntBASIC1.16□□□□□ -2.22
SOX2P48431 SNORA32-201ENST00000384072 121 ntBASIC1.16□□□□□ -2.22
SOX2P48431 MIR548A3-201ENST00000385297 97 ntBASIC1.16□□□□□ -2.22
SOX2P48431 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.16□□□□□ -2.22
SOX2P48431 SNORD77B-201ENST00000391112 67 ntBASIC1.16□□□□□ -2.22
SOX2P48431 SNORD111-201ENST00000408139 94 ntBASIC1.16□□□□□ -2.22
SOX2P48431 AC036111.3-201ENST00000526389 112 ntBASIC1.16□□□□□ -2.22
SOX2P48431 AL670379.3-201ENST00000605040 251 ntBASIC1.16□□□□□ -2.22
SOX2P48431 AL662814.1-201ENST00000617364 121 ntBASIC1.16□□□□□ -2.22
SOX2P48431 AC008163.1-202ENST00000636004 2889 ntBASIC1.16□□□□□ -2.22
SOX2P48431 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.15□□□□□ -2.22
SOX2P48431 RNY4P6-201ENST00000363667 96 ntBASIC1.15□□□□□ -2.23
SOX2P48431 Y_RNA.164-201ENST00000363709 102 ntBASIC1.15□□□□□ -2.23
SOX2P48431 Y_RNA.291-201ENST00000364886 113 ntBASIC1.15□□□□□ -2.23
SOX2P48431 Y_RNA.353-201ENST00000365440 108 ntBASIC1.15□□□□□ -2.23
SOX2P48431 MT-TI-201ENST00000387365 69 ntBASIC1.15□□□□□ -2.23
SOX2P48431 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
SOX2P48431 RNU6-1165P-201ENST00000410119 107 ntBASIC1.15□□□□□ -2.23
SOX2P48431 RNU6-1086P-201ENST00000410930 100 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms