Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU6-888P-201ENST00000363010 101 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 Y_RNA.91-201ENST00000363042 107 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 RNY4P28-201ENST00000365281 93 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 SNORA51.10-201ENST00000384418 136 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 RNU6-1011P-201ENST00000384668 107 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 MIR520F-201ENST00000384824 87 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 MIR616-201ENST00000385293 97 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 SNORD77.3-201ENST00000391113 65 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 RNU6-994P-201ENST00000410507 111 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 RNU6-938P-201ENST00000411285 103 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 RPS29P24-201ENST00000486345 171 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 RNA5SP153-201ENST00000516498 76 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 AC011195.1-201ENST00000578177 177 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 MIR3129-201ENST00000581095 76 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 MIR4804-201ENST00000581683 73 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 AC104465.1-201ENST00000611365 139 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 U6.104-201ENST00000637979 90 ntBASIC0.31□□□□□ -2.36
COL5A3P25940 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
COL5A3P25940 MIR367-201ENST00000362299 68 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 SNORD118-201ENST00000363593 134 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 Y_RNA.168-201ENST00000363740 102 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 MIR518F-201ENST00000384973 87 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 RNU6-578P-201ENST00000390980 103 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 AF228730.3-201ENST00000436691 102 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 RPS29P8-201ENST00000445109 171 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 MIR18B-201ENST00000454574 71 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.3□□□□□ -2.36
COL5A3P25940 RNU6-998P-201ENST00000515894 101 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 MIR2115-201ENST00000516657 100 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 AC062037.2-201ENST00000610137 73 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 RNA5SP48-201ENST00000363969 126 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 SNORD27-201ENST00000363981 72 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 SNORA1.1-201ENST00000364671 133 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 Y_RNA.350-201ENST00000365409 98 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 Y_RNA.539-201ENST00000384635 107 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 MIR604-201ENST00000384880 94 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 MIR125B2-201ENST00000385128 89 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 MIR601-201ENST00000385256 79 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 MIR548F4-201ENST00000408515 105 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 RNU2-38P-201ENST00000410856 79 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 AL121914.1-201ENST00000450188 156 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 AL353765.1-201ENST00000605514 183 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 AL442067.1-201ENST00000613261 223 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 U4.1-201ENST00000620349 87 ntBASIC0.3□□□□□ -2.36
COL5A3P25940 RNU6-369P-201ENST00000362515 102 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 Y_RNA.193-201ENST00000363979 102 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 RNU6-913P-201ENST00000390913 95 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 RNU6-381P-201ENST00000391259 108 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 RNU6-493P-201ENST00000391321 108 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 SNX3P1X-201ENST00000414887 175 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 MTCYBP9-201ENST00000431021 303 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 AL138752.1-201ENST00000452964 351 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 RNU4-54P-201ENST00000516428 129 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 MIR3128-201ENST00000581957 66 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 AC011921.3-201ENST00000605540 361 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 RNU6-94P-201ENST00000607728 107 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 Z97988.1-201ENST00000637697 135 ntBASIC0.29□□□□□ -2.36
COL5A3P25940 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
COL5A3P25940 RNU6-103P-201ENST00000363686 107 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 RNU6-1126P-201ENST00000384002 107 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 Y_RNA.461-201ENST00000384263 103 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 RNU6-574P-201ENST00000384265 107 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 MIR520H-201ENST00000385126 88 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 SNORA26.6-201ENST00000391256 115 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 SNORD83.1-201ENST00000411362 77 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.28□□□□□ -2.36
COL5A3P25940 RNU7-80P-201ENST00000459562 61 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 MTND1P19-201ENST00000511780 315 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 SNORD116-25-201ENST00000516517 92 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 SNORD36C-201ENST00000516733 66 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.28□□□□□ -2.36
COL5A3P25940 MIR548AX-201ENST00000580117 73 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 MIR4719-201ENST00000585233 84 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 AC097639.2-201ENST00000603159 172 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 RNU2-4P-201ENST00000606190 192 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 AL136317.1-201ENST00000612653 226 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 MIR6740-201ENST00000618268 113 ntBASIC0.28□□□□□ -2.36
COL5A3P25940 RNU4-17P-201ENST00000365598 141 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
COL5A3P25940 SNORD12C-201ENST00000386307 89 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR1827-201ENST00000408549 66 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 RNA5SP222-201ENST00000411039 105 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR4771-2-201ENST00000577758 74 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR378D2-201ENST00000580636 98 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR4771-1-201ENST00000582617 74 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 AL596211.1-201ENST00000569873 2277 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR101-1-201ENST00000362265 75 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 Y_RNA.20-201ENST00000362479 113 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 Y_RNA.477-201ENST00000384352 108 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 SNORD58.1-201ENST00000391313 66 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR1302-3-201ENST00000408128 138 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 Y_RNA.626-201ENST00000411288 95 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 RNU7-185P-201ENST00000459215 60 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 Y_RNA.680-201ENST00000516441 93 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 RNU7-70P-201ENST00000516941 66 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR4431-201ENST00000579990 94 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 MIR4503-201ENST00000582187 83 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 AL353621.2-201ENST00000605340 133 ntBASIC0.27□□□□□ -2.37
COL5A3P25940 AC020891.4-201ENST00000605745 93 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms