Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR548AR-201ENST00000582191 57 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 SNORA4-201ENST00000584302 138 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 FAM106DP-201ENST00000586416 501 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
COL6A1P12109 RNU6-1123P-201ENST00000362347 106 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 SNORA22.1-201ENST00000362701 134 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 Y_RNA.369-201ENST00000365568 117 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 Y_RNA.537-201ENST00000384626 109 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 Y_RNA.540-201ENST00000384638 111 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 RNU6-816P-201ENST00000390914 107 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 RNU6-1268P-201ENST00000391214 107 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 RNU6-1239P-201ENST00000391310 107 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 RNU7-45P-201ENST00000459460 63 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 RNU2-13P-201ENST00000515909 113 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 RNU6-970P-201ENST00000516312 107 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 MIR4791-201ENST00000607666 84 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 AL512598.1-201ENST00000610158 273 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 Y_RNA.818-201ENST00000618813 71 ntBASIC2.01□□□□□ -2.09
COL6A1P12109 Y_RNA.224-201ENST00000364308 111 ntBASIC2□□□□□ -2.09
COL6A1P12109 RNA5SP160-201ENST00000364866 120 ntBASIC2□□□□□ -2.09
COL6A1P12109 Y_RNA.348-201ENST00000365403 103 ntBASIC2□□□□□ -2.09
COL6A1P12109 SNORD28B-201ENST00000390993 75 ntBASIC2□□□□□ -2.09
COL6A1P12109 RNU4-69P-201ENST00000410677 143 ntBASIC2□□□□□ -2.09
COL6A1P12109 HSPE1P24-201ENST00000450782 238 ntBASIC2□□□□□ -2.09
COL6A1P12109 SNORA74.3-201ENST00000517108 154 ntBASIC2□□□□□ -2.09
COL6A1P12109 AC141557.1-201ENST00000540982 400 ntBASIC2□□□□□ -2.09
COL6A1P12109 MIR6504-201ENST00000613520 61 ntBASIC2□□□□□ -2.09
COL6A1P12109 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL6A1P12109 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL6A1P12109 SNORD115-19-201ENST00000363098 82 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 SNORD115-18-201ENST00000363293 82 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 RNU4-36P-201ENST00000364294 144 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 SNORD115-17-201ENST00000364612 82 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 RNA5SP138-201ENST00000365098 114 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 Y_RNA.430-201ENST00000384081 110 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 SNORA51.10-201ENST00000384418 136 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 RNU6-905P-201ENST00000384434 107 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 SNORD77B-201ENST00000391112 67 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 SNORA72.7-201ENST00000516349 94 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 MIR4422-201ENST00000581938 83 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 FAM71BP1-201ENST00000604431 523 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 MIR8063-201ENST00000621930 81 ntBASIC1.99□□□□□ -2.09
COL6A1P12109 SNORD115-2-201ENST00000362842 82 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 Y_RNA.171-201ENST00000363760 102 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 SNORD115-20-201ENST00000365099 82 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 MIR590-201ENST00000385008 97 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
COL6A1P12109 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 snoU13.16-201ENST00000459350 104 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 AC113410.1-201ENST00000505029 247 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 RNU7-43P-201ENST00000516554 64 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.98□□□□□ -2.09
COL6A1P12109 AL020996.3-201ENST00000606617 222 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 AC087741.2-201ENST00000619415 172 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 MIR6717-201ENST00000622747 73 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.98□□□□□ -2.09
COL6A1P12109 MIR2052-201ENST00000636055 55 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 MIR6841-201ENST00000637129 72 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 MIR4679-1-201ENST00000637619 75 ntBASIC1.98□□□□□ -2.09
COL6A1P12109 RNU6-640P-201ENST00000363693 105 ntBASIC1.97□□□□□ -2.09
COL6A1P12109 Y_RNA.327-201ENST00000365201 102 ntBASIC1.97□□□□□ -2.09
COL6A1P12109 SNORA26.6-201ENST00000391256 115 ntBASIC1.97□□□□□ -2.09
COL6A1P12109 RNU6-322P-201ENST00000516010 103 ntBASIC1.97□□□□□ -2.09
COL6A1P12109 RNA5SP33-201ENST00000516687 98 ntBASIC1.97□□□□□ -2.09
COL6A1P12109 MIR502-201ENST00000606349 86 ntBASIC1.97□□□□□ -2.09
COL6A1P12109 AC095038.3-201ENST00000634439 195 ntBASIC1.97□□□□□ -2.09
COL6A1P12109 Y_RNA.10-201ENST00000362371 110 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 Y_RNA.155-201ENST00000363632 101 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 RNU6-913P-201ENST00000390913 95 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 AC004965.1-201ENST00000413033 213 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 RPS3AP1-201ENST00000413190 320 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 JTBP1-201ENST00000441314 247 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 RNU6-904P-201ENST00000516206 101 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 DEFB131E-201ENST00000532329 154 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 MIR3618-201ENST00000580330 88 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 AL513534.2-201ENST00000603836 250 ntBASIC1.96□□□□□ -2.1
COL6A1P12109 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
COL6A1P12109 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A1P12109 RNU6-363P-201ENST00000362895 105 ntBASIC1.95□□□□□ -2.1
COL6A1P12109 SNORA1.1-201ENST00000364671 133 ntBASIC1.95□□□□□ -2.1
COL6A1P12109 RNU6-409P-201ENST00000384114 104 ntBASIC1.95□□□□□ -2.1
COL6A1P12109 MIR7-2-201ENST00000384970 110 ntBASIC1.95□□□□□ -2.1
COL6A1P12109 AC005908.1-201ENST00000468701 347 ntBASIC1.95□□□□□ -2.1
COL6A1P12109 RNU6-158P-201ENST00000517104 100 ntBASIC1.95□□□□□ -2.1
COL6A1P12109 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A1P12109 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A1P12109 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
COL6A1P12109 RNU4-67P-201ENST00000364569 141 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 Y_RNA.354-201ENST00000365448 111 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 SNORA19.1-201ENST00000410656 129 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 RNU6-733P-201ENST00000410759 104 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A1P12109 RNU6-109P-201ENST00000516364 107 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 RNU6-184P-201ENST00000516514 107 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 RNU6-1258P-201ENST00000516911 111 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 RNA5SP364-201ENST00000516938 78 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 MIR4764-201ENST00000580680 88 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 MIR548AE2-201ENST00000583456 67 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 AC008133.2-201ENST00000624540 351 ntBASIC1.94□□□□□ -2.1
COL6A1P12109 Y_RNA.93-201ENST00000363066 109 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms