Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.92□□□□□ -2.56
LIMS3P0CW19 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-0.92□□□□□ -2.56
LIMS3P0CW19 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.92□□□□□ -2.56
LIMS3P0CW19 MTND5P32-201ENST00000560711 1802 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 Y_RNA.229-201ENST00000364347 113 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 SNORA25.7-201ENST00000364375 127 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 U8.6-201ENST00000364939 135 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 RNU6-1040P-201ENST00000383974 107 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 RNU6-484P-201ENST00000384016 107 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 MIR7-2-201ENST00000384970 110 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 AC006006.1-201ENST00000603082 144 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 AC097639.2-201ENST00000603159 172 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 RNU7-10P-201ENST00000607194 63 ntBASIC-0.93□□□□□ -2.56
LIMS3P0CW19 RNU6-845P-201ENST00000362578 103 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 Y_RNA.39-201ENST00000362620 98 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 Y_RNA.432-201ENST00000384087 111 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 RNA5SP484-201ENST00000458857 111 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 RNU6-559P-201ENST00000516151 98 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 RNU6-758P-201ENST00000516292 89 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 RNU6-720P-201ENST00000516363 108 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 RNU6-358P-201ENST00000516564 75 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 RNU7-70P-201ENST00000516941 66 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 AC026407.1-201ENST00000518369 204 ntBASIC-0.94□□□□□ -2.56
LIMS3P0CW19 Y_RNA.380-201ENST00000365663 111 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 Y_RNA.569-201ENST00000384749 103 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 MT-TQ-201ENST00000387372 72 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 RNU6-507P-201ENST00000516045 100 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 RNU6-718P-201ENST00000516166 105 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 MIR4436A-201ENST00000585278 85 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 AC108676.2-201ENST00000605225 163 ntBASIC-0.95□□□□□ -2.56
LIMS3P0CW19 Y_RNA.3-201ENST00000362331 103 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 SNORD113-8-201ENST00000363497 74 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 Y_RNA.463-201ENST00000384271 102 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 SNORD116-2-201ENST00000384274 95 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 Y_RNA.466-201ENST00000384294 113 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 Y_RNA.471-201ENST00000384312 102 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 SNORD116-6-201ENST00000384711 96 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 RNU4-63P-201ENST00000411313 118 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 AL022718.1-201ENST00000412004 84 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-0.96□□□□□ -2.56
LIMS3P0CW19 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 RNU7-35P-201ENST00000517174 62 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 AC098479.1-201ENST00000609225 154 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-0.96□□□□□ -2.56
LIMS3P0CW19 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.96□□□□□ -2.56
LIMS3P0CW19 RNA5SP368-201ENST00000364298 116 ntBASIC-0.97□□□□□ -2.56
LIMS3P0CW19 RNU6-865P-201ENST00000364772 107 ntBASIC-0.97□□□□□ -2.56
LIMS3P0CW19 Y_RNA.516-201ENST00000384541 124 ntBASIC-0.97□□□□□ -2.56
LIMS3P0CW19 AC074198.2-201ENST00000508153 258 ntBASIC-0.97□□□□□ -2.56
LIMS3P0CW19 SNORA20.3-201ENST00000516880 132 ntBASIC-0.97□□□□□ -2.56
LIMS3P0CW19 MIR3129-201ENST00000581095 76 ntBASIC-0.97□□□□□ -2.56
LIMS3P0CW19 AC113139.1-201ENST00000605049 239 ntBASIC-0.97□□□□□ -2.56
LIMS3P0CW19 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.97□□□□□ -2.56
LIMS3P0CW19 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 SNORD114-14-201ENST00000362723 75 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 RNU4-90P-201ENST00000362773 141 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 RNU4-10P-201ENST00000364383 140 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 RNU6-449P-201ENST00000383914 107 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 RNY3P5-201ENST00000384127 102 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 Z95118.1-201ENST00000421372 247 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 MTND4LP30-201ENST00000454092 297 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 RNU7-74P-201ENST00000459104 62 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 AC069439.1-201ENST00000494739 167 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 AL606534.2-204ENST00000635008 178 ntBASIC-0.98□□□□□ -2.57
LIMS3P0CW19 Y_RNA.24-201ENST00000362508 103 ntBASIC-0.99□□□□□ -2.57
LIMS3P0CW19 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.99□□□□□ -2.57
LIMS3P0CW19 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-0.99□□□□□ -2.57
LIMS3P0CW19 MIR548F1-201ENST00000408667 84 ntBASIC-0.99□□□□□ -2.57
LIMS3P0CW19 RNU6-130P-201ENST00000411112 103 ntBASIC-0.99□□□□□ -2.57
LIMS3P0CW19 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-0.99□□□□□ -2.57
LIMS3P0CW19 HSPE1P25-201ENST00000455484 251 ntBASIC-0.99□□□□□ -2.57
LIMS3P0CW19 RNA5SP66-201ENST00000517178 101 ntBASIC-0.99□□□□□ -2.57
LIMS3P0CW19 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.99□□□□□ -2.57
LIMS3P0CW19 Y_RNA.23-201ENST00000362496 106 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 Y_RNA.259-201ENST00000364619 101 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 RNY1P2-201ENST00000364820 117 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 RNU1-115P-201ENST00000365329 160 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 RNU6-1144P-201ENST00000384247 104 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 RNU6-429P-201ENST00000384582 108 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 MIR599-201ENST00000385069 95 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1□□□□□ -2.57
LIMS3P0CW19 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-1□□□□□ -2.57
LIMS3P0CW19 AL731563.1-201ENST00000442202 214 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 Y_RNA.639-201ENST00000458981 102 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 PART1_1.1-201ENST00000611761 217 ntBASIC-1□□□□□ -2.57
LIMS3P0CW19 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 RNU6-102P-201ENST00000384485 104 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 MIR635-201ENST00000384830 98 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-1.01□□□□□ -2.57
LIMS3P0CW19 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 SNRPGP8-201ENST00000454064 226 ntBASIC-1.01□□□□□ -2.57
LIMS3P0CW19 Y_RNA.681-201ENST00000516445 113 ntBASIC-1.01□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 297.5 ms