Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNA5SP89-201ENST00000410300 108 ntBASIC1.33□□□□□ -2.2
LDB3O75112 RNU6-177P-201ENST00000411257 104 ntBASIC1.33□□□□□ -2.2
LDB3O75112 RNU6-922P-201ENST00000516753 99 ntBASIC1.33□□□□□ -2.2
LDB3O75112 RNU1-92P-201ENST00000517017 135 ntBASIC1.33□□□□□ -2.2
LDB3O75112 MIR548AO-201ENST00000579992 96 ntBASIC1.33□□□□□ -2.2
LDB3O75112 MIR6717-201ENST00000622747 73 ntBASIC1.33□□□□□ -2.2
LDB3O75112 MIR1255B1-201ENST00000636325 63 ntBASIC1.33□□□□□ -2.2
LDB3O75112 SNORA1.2-201ENST00000365189 134 ntBASIC1.32□□□□□ -2.2
LDB3O75112 Y_RNA.531-201ENST00000384589 121 ntBASIC1.32□□□□□ -2.2
LDB3O75112 MIR548D2-201ENST00000384955 97 ntBASIC1.32□□□□□ -2.2
LDB3O75112 RNU7-73P-201ENST00000458743 63 ntBASIC1.32□□□□□ -2.2
LDB3O75112 RPL39P34-201ENST00000477141 156 ntBASIC1.32□□□□□ -2.2
LDB3O75112 RPS23P4-201ENST00000487908 423 ntBASIC1.32□□□□□ -2.2
LDB3O75112 RNA5SP61-201ENST00000516453 100 ntBASIC1.32□□□□□ -2.2
LDB3O75112 RNU7-6P-201ENST00000516845 62 ntBASIC1.32□□□□□ -2.2
LDB3O75112 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.32□□□□□ -2.2
LDB3O75112 MIR3192-201ENST00000584920 77 ntBASIC1.32□□□□□ -2.2
LDB3O75112 MIR8055-201ENST00000610739 97 ntBASIC1.32□□□□□ -2.2
LDB3O75112 GHRLOS.1-201ENST00000610995 70 ntBASIC1.32□□□□□ -2.2
LDB3O75112 AC008133.2-201ENST00000624540 351 ntBASIC1.32□□□□□ -2.2
LDB3O75112 ZNF209P-201ENST00000593450 2304 ntBASIC1.32□□□□□ -2.2
LDB3O75112 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
LDB3O75112 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
LDB3O75112 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.31□□□□□ -2.2
LDB3O75112 SNORA22.1-201ENST00000362701 134 ntBASIC1.31□□□□□ -2.2
LDB3O75112 Y_RNA.213-201ENST00000364178 111 ntBASIC1.31□□□□□ -2.2
LDB3O75112 U8.6-201ENST00000364939 135 ntBASIC1.31□□□□□ -2.2
LDB3O75112 RNU6-1014P-201ENST00000383940 103 ntBASIC1.31□□□□□ -2.2
LDB3O75112 SNORA51.10-201ENST00000384418 136 ntBASIC1.31□□□□□ -2.2
LDB3O75112 Y_RNA.537-201ENST00000384626 109 ntBASIC1.31□□□□□ -2.2
LDB3O75112 RNU6-997P-201ENST00000384725 107 ntBASIC1.31□□□□□ -2.2
LDB3O75112 MIR4679-2-201ENST00000578358 77 ntBASIC1.31□□□□□ -2.2
LDB3O75112 MIR548AE2-201ENST00000583456 67 ntBASIC1.31□□□□□ -2.2
LDB3O75112 AP000942.3-201ENST00000603702 160 ntBASIC1.31□□□□□ -2.2
LDB3O75112 AL357312.1-201ENST00000603879 298 ntBASIC1.31□□□□□ -2.2
LDB3O75112 AL512598.1-201ENST00000610158 273 ntBASIC1.31□□□□□ -2.2
LDB3O75112 AL096861.1-201ENST00000610899 123 ntBASIC1.31□□□□□ -2.2
LDB3O75112 Y_RNA.163-201ENST00000363702 113 ntBASIC1.3□□□□□ -2.2
LDB3O75112 SNORA1.1-201ENST00000364671 133 ntBASIC1.3□□□□□ -2.2
LDB3O75112 RNU6-342P-201ENST00000384521 104 ntBASIC1.3□□□□□ -2.2
LDB3O75112 MIR520C-201ENST00000385005 87 ntBASIC1.3□□□□□ -2.2
LDB3O75112 MIR1302-7-201ENST00000408841 72 ntBASIC1.3□□□□□ -2.2
LDB3O75112 BTF3P4-201ENST00000418852 495 ntBASIC1.3□□□□□ -2.2
LDB3O75112 AL353813.1-201ENST00000440700 253 ntBASIC1.3□□□□□ -2.2
LDB3O75112 RNU7-95P-201ENST00000459222 64 ntBASIC1.3□□□□□ -2.2
LDB3O75112 AC107297.1-201ENST00000459991 176 ntBASIC1.3□□□□□ -2.2
LDB3O75112 RPL30P7-201ENST00000479312 323 ntBASIC1.3□□□□□ -2.2
LDB3O75112 RNU6-168P-201ENST00000516189 101 ntBASIC1.3□□□□□ -2.2
LDB3O75112 RNY4P6-201ENST00000363667 96 ntBASIC1.29□□□□□ -2.2
LDB3O75112 Y_RNA.323-201ENST00000365157 109 ntBASIC1.29□□□□□ -2.2
LDB3O75112 Y_RNA.328-201ENST00000365208 113 ntBASIC1.29□□□□□ -2.2
LDB3O75112 SNORA32-201ENST00000384072 121 ntBASIC1.29□□□□□ -2.2
LDB3O75112 AL022718.1-201ENST00000412004 84 ntBASIC1.29□□□□□ -2.2
LDB3O75112 AL031737.1-201ENST00000450125 223 ntBASIC1.29□□□□□ -2.2
LDB3O75112 RNU1-98P-201ENST00000458992 160 ntBASIC1.29□□□□□ -2.2
LDB3O75112 RNU7-113P-201ENST00000459273 62 ntBASIC1.29□□□□□ -2.2
LDB3O75112 AC113410.1-201ENST00000505029 247 ntBASIC1.29□□□□□ -2.2
LDB3O75112 RNU6-109P-201ENST00000516364 107 ntBASIC1.29□□□□□ -2.2
LDB3O75112 RNU6-184P-201ENST00000516514 107 ntBASIC1.29□□□□□ -2.2
LDB3O75112 RNU7-43P-201ENST00000516554 64 ntBASIC1.29□□□□□ -2.2
LDB3O75112 RNU7-53P-201ENST00000516705 60 ntBASIC1.29□□□□□ -2.2
LDB3O75112 AC068339.1-201ENST00000526965 141 ntBASIC1.29□□□□□ -2.2
LDB3O75112 MIR3163-201ENST00000581592 73 ntBASIC1.29□□□□□ -2.2
LDB3O75112 MIR8065-201ENST00000620577 100 ntBASIC1.29□□□□□ -2.2
LDB3O75112 SNORA25.3-201ENST00000363205 127 ntBASIC1.28□□□□□ -2.2
LDB3O75112 Y_RNA.495-201ENST00000384435 112 ntBASIC1.28□□□□□ -2.2
LDB3O75112 RNU6-1307P-201ENST00000391012 103 ntBASIC1.28□□□□□ -2.2
LDB3O75112 RNU6-602P-201ENST00000411155 105 ntBASIC1.28□□□□□ -2.2
LDB3O75112 AC009474.2-201ENST00000451383 136 ntBASIC1.28□□□□□ -2.2
LDB3O75112 RNA5SP33-201ENST00000516687 98 ntBASIC1.28□□□□□ -2.2
LDB3O75112 AL512310.8-201ENST00000550183 120 ntBASIC1.28□□□□□ -2.2
LDB3O75112 MIR5009-201ENST00000578736 100 ntBASIC1.28□□□□□ -2.2
LDB3O75112 MIR3664-201ENST00000579074 99 ntBASIC1.28□□□□□ -2.2
LDB3O75112 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
LDB3O75112 AL589743.1-201ENST00000551932 2712 ntBASIC1.27□□□□□ -2.21
LDB3O75112 MIR378A-201ENST00000362177 66 ntBASIC1.27□□□□□ -2.21
LDB3O75112 SNORD115-2-201ENST00000362842 82 ntBASIC1.27□□□□□ -2.21
LDB3O75112 SNORD115-20-201ENST00000365099 82 ntBASIC1.27□□□□□ -2.21
LDB3O75112 Y_RNA.430-201ENST00000384081 110 ntBASIC1.27□□□□□ -2.21
LDB3O75112 SNORD26-201ENST00000384147 75 ntBASIC1.27□□□□□ -2.21
LDB3O75112 SNORA70.7-201ENST00000384159 133 ntBASIC1.27□□□□□ -2.21
LDB3O75112 RNU6-616P-201ENST00000384353 107 ntBASIC1.27□□□□□ -2.21
LDB3O75112 RNU6-1067P-201ENST00000384752 107 ntBASIC1.27□□□□□ -2.21
LDB3O75112 MIR590-201ENST00000385008 97 ntBASIC1.27□□□□□ -2.21
LDB3O75112 MIR605-201ENST00000385078 83 ntBASIC1.27□□□□□ -2.21
LDB3O75112 AP1B1P2-201ENST00000416196 106 ntBASIC1.27□□□□□ -2.21
LDB3O75112 SNORD111.1-201ENST00000516421 86 ntBASIC1.27□□□□□ -2.21
LDB3O75112 RNU6-412P-201ENST00000516434 106 ntBASIC1.27□□□□□ -2.21
LDB3O75112 RNU6-537P-201ENST00000517277 103 ntBASIC1.27□□□□□ -2.21
LDB3O75112 MIR4421-201ENST00000578133 69 ntBASIC1.27□□□□□ -2.21
LDB3O75112 RNU6-94P-201ENST00000607728 107 ntBASIC1.27□□□□□ -2.21
LDB3O75112 MIR4251-201ENST00000635819 61 ntBASIC1.27□□□□□ -2.21
LDB3O75112 AL162726.3-218ENST00000636401 95 ntBASIC1.27□□□□□ -2.21
LDB3O75112 Z97988.1-201ENST00000637697 135 ntBASIC1.27□□□□□ -2.21
LDB3O75112 SNORD115-19-201ENST00000363098 82 ntBASIC1.26□□□□□ -2.21
LDB3O75112 SNORD115-18-201ENST00000363293 82 ntBASIC1.26□□□□□ -2.21
LDB3O75112 RNU6-640P-201ENST00000363693 105 ntBASIC1.26□□□□□ -2.21
LDB3O75112 SNORD115-17-201ENST00000364612 82 ntBASIC1.26□□□□□ -2.21
LDB3O75112 Y_RNA.348-201ENST00000365403 103 ntBASIC1.26□□□□□ -2.21
LDB3O75112 RNU6-756P-201ENST00000383997 107 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms