Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
HOXA3O43365 Y_RNA.328-201ENST00000365208 113 ntBASIC1.62□□□□□ -2.15
HOXA3O43365 MIR1302-7-201ENST00000408841 72 ntBASIC1.62□□□□□ -2.15
HOXA3O43365 AL445685.2-201ENST00000422551 342 ntBASIC1.62□□□□□ -2.15
HOXA3O43365 RNA5SP458-201ENST00000516188 119 ntBASIC1.62□□□□□ -2.15
HOXA3O43365 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.62□□□□□ -2.15
HOXA3O43365 AP000942.3-201ENST00000603702 160 ntBASIC1.62□□□□□ -2.15
HOXA3O43365 SNRPGP19-201ENST00000603826 189 ntBASIC1.62□□□□□ -2.15
HOXA3O43365 MIR6845-201ENST00000613182 61 ntBASIC1.62□□□□□ -2.15
HOXA3O43365 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
HOXA3O43365 Y_RNA.155-201ENST00000363632 101 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 RNU4-67P-201ENST00000364569 141 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 RNA5SP138-201ENST00000365098 114 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 RNU6-409P-201ENST00000384114 104 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 RNU6-1237P-201ENST00000384777 107 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 SNORA26.9-201ENST00000391322 122 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 RPL31P63-201ENST00000422565 375 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 AC244023.1-201ENST00000426884 112 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 AC027119.1-201ENST00000440877 241 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 RNU7-35P-201ENST00000517174 62 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 MIR4448-201ENST00000584360 86 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.61□□□□□ -2.15
HOXA3O43365 AC242498.1-201ENST00000604134 111 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 FAM71BP1-201ENST00000604431 523 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 uc_338.20-201ENST00000621563 178 ntBASIC1.61□□□□□ -2.15
HOXA3O43365 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.61□□□□□ -2.15
HOXA3O43365 RNU6-1065P-201ENST00000384513 106 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 SNORA40.18-201ENST00000391200 128 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 SNORA7.5-201ENST00000410672 110 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 RNU6-733P-201ENST00000410759 104 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 RNU6-717P-201ENST00000459076 104 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 RNU7-79P-201ENST00000516082 62 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 MIR3198-2-201ENST00000577868 80 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 MIR3937-201ENST00000580135 106 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 AL359851.1-201ENST00000569460 4997 ntBASIC1.6□□□□□ -2.15
HOXA3O43365 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXA3O43365 Y_RNA.78-201ENST00000362970 110 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 Y_RNA.140-201ENST00000363474 103 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 RNU6-396P-201ENST00000365369 105 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 MIR605-201ENST00000385078 83 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 RNU6-1086P-201ENST00000410930 100 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 RNU6-521P-201ENST00000516663 105 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 MIR514B-201ENST00000516774 80 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 RNU6-537P-201ENST00000517277 103 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 AC141557.1-201ENST00000540982 400 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 MIR3664-201ENST00000579074 99 ntBASIC1.59□□□□□ -2.15
HOXA3O43365 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
HOXA3O43365 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
HOXA3O43365 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
HOXA3O43365 RNU6-1298P-201ENST00000362456 101 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 RNU6-1099P-201ENST00000363533 107 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 MIR590-201ENST00000385008 97 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 RNU1-78P-201ENST00000391248 165 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 SNORA19.1-201ENST00000410656 129 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.58□□□□□ -2.16
HOXA3O43365 AL603825.1-201ENST00000438481 80 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 AC025033.1-201ENST00000463883 194 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 RNA5SP182-201ENST00000516064 82 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 Y_RNA.677-201ENST00000516401 85 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 AP003716.2-201ENST00000528260 108 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.58□□□□□ -2.16
HOXA3O43365 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
HOXA3O43365 ZNF355P-201ENST00000427301 3216 ntBASIC1.58□□□□□ -2.16
HOXA3O43365 SNORD115-35-201ENST00000365122 82 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 Y_RNA.360-201ENST00000365512 102 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 RNU6-679P-201ENST00000391003 106 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 RNA5SP247-201ENST00000411181 105 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 RPL30P7-201ENST00000479312 323 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 RN7SL274P-201ENST00000492268 272 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 AC008834.1-201ENST00000511612 175 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 RNU6-904P-201ENST00000516206 101 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 DEFB131E-201ENST00000532329 154 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 AP001318.4-201ENST00000616637 121 ntBASIC1.57□□□□□ -2.16
HOXA3O43365 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.57□□□□□ -2.16
HOXA3O43365 RNA5SP264-201ENST00000363115 107 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
HOXA3O43365 RNA5SP237-201ENST00000410414 113 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 AL353813.1-201ENST00000440700 253 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 snoU13.2-201ENST00000459201 104 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 RNU6-109P-201ENST00000516364 107 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 RNU6-184P-201ENST00000516514 107 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 RNA5SP170-201ENST00000517150 101 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 RNU6-165P-201ENST00000517170 99 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 MIR5002-201ENST00000584713 97 ntBASIC1.56□□□□□ -2.16
HOXA3O43365 RNU1-17P-201ENST00000363022 152 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 RNU4-36P-201ENST00000364294 144 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 Y_RNA.348-201ENST00000365403 103 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 Y_RNA.544-201ENST00000384650 113 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 MIR588-201ENST00000384900 83 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 MIR577-201ENST00000385196 96 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 MIR1185-1-201ENST00000408598 86 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 RNA5SP489-201ENST00000410986 109 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 RNU7-2P-201ENST00000516096 62 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 MIR2115-201ENST00000516657 100 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 RNU11-2P-201ENST00000516898 142 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 AL512310.8-201ENST00000550183 120 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 MIR4694-201ENST00000578534 80 ntBASIC1.55□□□□□ -2.16
HOXA3O43365 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms