Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 MT-TF-201ENST00000387314 71 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 RNA5SP237-201ENST00000410414 113 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 RNA5SP261-201ENST00000410536 106 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 RNU2-38P-201ENST00000410856 79 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 RPL39P25-201ENST00000449384 154 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 MIR924-201ENST00000638017 53 ntBASIC0.35□□□□□ -2.35
NPIPA2E9PIF3 Y_RNA.308-201ENST00000365043 101 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 RNA5SP117-201ENST00000365294 118 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.454-201ENST00000384224 113 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.459-201ENST00000384251 102 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 AL358176.2-201ENST00000425769 204 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 SNORA25.12-201ENST00000516202 82 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 MIR3152-201ENST00000579801 74 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 MIR4744-201ENST00000581563 82 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 AC011921.3-201ENST00000605540 361 ntBASIC0.34□□□□□ -2.36
NPIPA2E9PIF3 AC090625.1-201ENST00000357130 210 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 SNORA63-201ENST00000363450 132 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 RNU6-103P-201ENST00000363686 107 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 RNA5SP517-201ENST00000364724 117 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 RNU6-1292P-201ENST00000383856 107 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 RNU6-493P-201ENST00000391321 108 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 RNU4-83P-201ENST00000410863 133 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 RNU7-70P-201ENST00000516941 66 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 RNU6-448P-201ENST00000517052 107 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 AL117187.1-201ENST00000555482 181 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.812-201ENST00000610788 101 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.784-201ENST00000613803 101 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.787-201ENST00000616522 101 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.780-201ENST00000617336 101 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.801-201ENST00000619005 101 ntBASIC0.33□□□□□ -2.36
NPIPA2E9PIF3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 MIRLET7D-201ENST00000362263 87 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.145-201ENST00000363527 102 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 SNORA20-201ENST00000384662 132 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.617-201ENST00000410920 90 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 RNA5SP94-201ENST00000516917 108 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 MIR3678-201ENST00000578455 94 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 AL365205.2-201ENST00000594586 68 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 RNU2-4P-201ENST00000606190 192 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 AL662814.1-201ENST00000617364 121 ntBASIC0.32□□□□□ -2.36
NPIPA2E9PIF3 RNU6-403P-201ENST00000363163 104 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.518-201ENST00000384552 113 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 RNU6-578P-201ENST00000390980 103 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 RNU4-43P-201ENST00000410628 137 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 SNORD127-201ENST00000458892 86 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 SNORD116-25-201ENST00000516517 92 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 RNA5SP330-201ENST00000517096 96 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 MIR378D2-201ENST00000580636 98 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 MIR8087-201ENST00000612745 78 ntBASIC0.31□□□□□ -2.36
NPIPA2E9PIF3 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.65-201ENST00000362846 100 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 SNORD27-201ENST00000363981 72 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 RNU6-923P-201ENST00000364753 107 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.430-201ENST00000384081 110 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 U8.15-201ENST00000390947 134 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.797-201ENST00000515977 94 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 SNORA25.18-201ENST00000607153 114 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 MIR8066-201ENST00000617280 78 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 AC021613.1-201ENST00000623880 111 ntBASIC0.3□□□□□ -2.36
NPIPA2E9PIF3 MIR330-201ENST00000362196 94 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 SNORA22.1-201ENST00000362701 134 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.115-201ENST00000363272 98 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.149-201ENST00000363558 117 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 RNU6-978P-201ENST00000364371 103 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 RNU4-16P-201ENST00000364737 141 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.288-201ENST00000364854 92 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 SNORA40.8-201ENST00000411034 126 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 RNA5SP134-201ENST00000516492 96 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 AC133485.4-201ENST00000561835 220 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 MIR4514-201ENST00000581410 57 ntBASIC0.29□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.13-201ENST00000362403 112 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 RNY4P28-201ENST00000365281 93 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 RNU6-716P-201ENST00000365621 103 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.477-201ENST00000384352 108 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 RNU6-738P-201ENST00000384531 106 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 MIR518A1-201ENST00000385068 85 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 MIR644A-201ENST00000385262 94 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 MIR1197-201ENST00000408818 88 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 SNORD71-201ENST00000411292 86 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 RNU6-1149P-201ENST00000516810 97 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 AC141846.1-201ENST00000568348 142 ntBASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
NPIPA2E9PIF3 Y_RNA.42-201ENST00000362660 108 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 SNORD44.1-201ENST00000363202 61 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 MIR548H3-201ENST00000408771 118 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 RNA5SP127-201ENST00000411051 133 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 MTND2P23-201ENST00000422990 651 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 uc_338.16-201ENST00000621804 95 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 MIR6841-201ENST00000637129 72 ntBASIC0.27□□□□□ -2.37
NPIPA2E9PIF3 Y_RNA.182-201ENST00000363880 111 ntBASIC0.26□□□□□ -2.37
NPIPA2E9PIF3 SNORA18-201ENST00000384416 132 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 314.9 ms