Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-910P-201ENST00000390844 107 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 SUMO2P12-201ENST00000405924 140 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 Y_RNA.686-201ENST00000516548 134 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 MIR6078-201ENST00000611069 100 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 AC011603.4-201ENST00000611325 277 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 MIR26B-201ENST00000362251 77 ntBASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 Y_RNA.393-201ENST00000383936 102 ntBASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-44P-201ENST00000384045 107 ntBASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-768P-201ENST00000384683 107 ntBASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 AC090821.2-201ENST00000523552 176 ntBASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 MIR4791-201ENST00000607666 84 ntBASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 AP001340.1-201ENST00000624405 217 ntBASIC2.07□□□□□ -2.08
CCDC9Q9Y3X0 MIR96-201ENST00000362288 78 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 Y_RNA.36-201ENST00000362602 112 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 SNORA25.8-201ENST00000364831 128 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-1325P-201ENST00000364905 105 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 AP001328.1-201ENST00000528550 176 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 AL022345.2-201ENST00000606307 135 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 AC243994.1-201ENST00000618627 109 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 PVT1_3.1-201ENST00000620853 95 ntBASIC2.06□□□□□ -2.08
CCDC9Q9Y3X0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 MIR103A2-201ENST00000362154 78 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 Y_RNA.410-201ENST00000383992 113 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 SNORA25-201ENST00000384384 134 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 SNORA40.5-201ENST00000391061 128 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-460P-201ENST00000391158 108 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 SNORA75.5-201ENST00000391291 81 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-588P-201ENST00000410281 105 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-659P-201ENST00000516454 104 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 MIR378D2-201ENST00000580636 98 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 U7.2-201ENST00000607576 63 ntBASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC9Q9Y3X0 RNA5SP264-201ENST00000363115 107 ntBASIC2.04□□□□□ -2.08
CCDC9Q9Y3X0 SNORA25.3-201ENST00000363205 127 ntBASIC2.04□□□□□ -2.08
CCDC9Q9Y3X0 Y_RNA.251-201ENST00000364551 99 ntBASIC2.04□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-1056P-201ENST00000383996 107 ntBASIC2.04□□□□□ -2.08
CCDC9Q9Y3X0 Y_RNA.563-201ENST00000384707 108 ntBASIC2.04□□□□□ -2.08
CCDC9Q9Y3X0 AF228730.3-201ENST00000436691 102 ntBASIC2.04□□□□□ -2.08
CCDC9Q9Y3X0 RN7SKP179-201ENST00000516126 217 ntBASIC2.04□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-153P-201ENST00000364422 104 ntBASIC2.03□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-597P-201ENST00000365620 102 ntBASIC2.03□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-1189P-201ENST00000383958 107 ntBASIC2.03□□□□□ -2.08
CCDC9Q9Y3X0 RNU7-67P-201ENST00000459003 62 ntBASIC2.03□□□□□ -2.08
CCDC9Q9Y3X0 SNORD36C-201ENST00000516733 66 ntBASIC2.03□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-915P-201ENST00000364943 103 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 SNORA27-201ENST00000384323 126 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 SNORA80D-201ENST00000384488 135 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-938P-201ENST00000411285 103 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 AL354695.1-201ENST00000427935 228 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 RPS29P29-201ENST00000456396 171 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 snoU13.25-201ENST00000458945 104 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 RPS26P48-201ENST00000491713 339 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 MIR3129-201ENST00000581095 76 ntBASIC2.02□□□□□ -2.09
CCDC9Q9Y3X0 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC9Q9Y3X0 SNORD48-201ENST00000364953 64 ntBASIC2.01□□□□□ -2.09
CCDC9Q9Y3X0 SNORA1-201ENST00000384107 130 ntBASIC2.01□□□□□ -2.09
CCDC9Q9Y3X0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CCDC9Q9Y3X0 RNU2-13P-201ENST00000515909 113 ntBASIC2.01□□□□□ -2.09
CCDC9Q9Y3X0 SNORA18.4-201ENST00000516440 124 ntBASIC2.01□□□□□ -2.09
CCDC9Q9Y3X0 PRELID3BP2-201ENST00000605362 201 ntBASIC2.01□□□□□ -2.09
CCDC9Q9Y3X0 RNY1P11-201ENST00000363759 113 ntBASIC2□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.584-201ENST00000391090 114 ntBASIC2□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-1064P-201ENST00000410626 104 ntBASIC2□□□□□ -2.09
CCDC9Q9Y3X0 AL591704.2-201ENST00000421658 181 ntBASIC2□□□□□ -2.09
CCDC9Q9Y3X0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2□□□□□ -2.09
CCDC9Q9Y3X0 RPS29P1-201ENST00000465274 159 ntBASIC2□□□□□ -2.09
CCDC9Q9Y3X0 RNU7-40P-201ENST00000516397 64 ntBASIC2□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.757-201ENST00000578934 114 ntBASIC2□□□□□ -2.09
CCDC9Q9Y3X0 SNORA25.7-201ENST00000364375 127 ntBASIC1.99□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-1082P-201ENST00000364574 107 ntBASIC1.99□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-342P-201ENST00000384521 104 ntBASIC1.99□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-955P-201ENST00000410497 104 ntBASIC1.99□□□□□ -2.09
CCDC9Q9Y3X0 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC9Q9Y3X0 RNU7-107P-201ENST00000459121 61 ntBASIC1.99□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.712-201ENST00000517011 92 ntBASIC1.99□□□□□ -2.09
CCDC9Q9Y3X0 SNORD114-27-201ENST00000363766 70 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 RNA5SP363-201ENST00000365072 115 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-476P-201ENST00000384726 107 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 MIR520E-201ENST00000384867 87 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 MIR598-201ENST00000384868 97 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 SNORD12-201ENST00000391002 90 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 RPS29P24-201ENST00000486345 171 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 SNORD79.1-201ENST00000516069 84 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 AL365205.2-201ENST00000594586 68 ntBASIC1.98□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.205-201ENST00000364128 113 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-978P-201ENST00000364371 103 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.354-201ENST00000365448 111 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.494-201ENST00000384432 111 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 PDCD5P2-201ENST00000507570 312 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.692-201ENST00000516627 105 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 RNU7-53P-201ENST00000516705 60 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 RNU6-958P-201ENST00000516995 106 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 AL391516.1-201ENST00000554380 2449 ntBASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC9Q9Y3X0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 248.2 ms