Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.71□□□□□ -1.98
CHMP3Q9Y3E7 AC005336.3-201ENST00000623833 2679 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 SNORA1.1-201ENST00000364671 133 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 RNU6-203P-201ENST00000384038 104 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 Y_RNA.467-201ENST00000384297 102 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 Y_RNA.537-201ENST00000384626 109 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 RNA5SP261-201ENST00000410536 106 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 Y_RNA.659-201ENST00000515994 113 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 MIR8055-201ENST00000610739 97 ntBASIC2.7□□□□□ -1.98
CHMP3Q9Y3E7 AL596028.1-201ENST00000326971 197 ntBASIC2.69□□□□□ -1.98
CHMP3Q9Y3E7 RNU6-60P-201ENST00000364792 103 ntBASIC2.69□□□□□ -1.98
CHMP3Q9Y3E7 SNORA18-201ENST00000384416 132 ntBASIC2.69□□□□□ -1.98
CHMP3Q9Y3E7 RNU6-1307P-201ENST00000391012 103 ntBASIC2.69□□□□□ -1.98
CHMP3Q9Y3E7 AC096949.1-201ENST00000412047 152 ntBASIC2.69□□□□□ -1.98
CHMP3Q9Y3E7 snoU13.15-201ENST00000459407 104 ntBASIC2.69□□□□□ -1.98
CHMP3Q9Y3E7 SNORA31.25-201ENST00000517242 134 ntBASIC2.69□□□□□ -1.98
CHMP3Q9Y3E7 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.68□□□□□ -1.98
CHMP3Q9Y3E7 Y_RNA.247-201ENST00000364500 92 ntBASIC2.68□□□□□ -1.98
CHMP3Q9Y3E7 AC245047.7-201ENST00000440265 293 ntBASIC2.68□□□□□ -1.98
CHMP3Q9Y3E7 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.68□□□□□ -1.98
CHMP3Q9Y3E7 RNA5SP200-201ENST00000516360 103 ntBASIC2.68□□□□□ -1.98
CHMP3Q9Y3E7 AL512310.12-203ENST00000640543 90 ntBASIC2.68□□□□□ -1.98
CHMP3Q9Y3E7 SNORD45B-201ENST00000364617 72 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 SNORA16B-201ENST00000364674 135 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 Y_RNA.377-201ENST00000365644 108 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 RNU6-820P-201ENST00000384273 107 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 snoU13.16-201ENST00000459350 104 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 RNU6-1018P-201ENST00000516577 106 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 MIR4764-201ENST00000580680 88 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 MIR8065-201ENST00000620577 100 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 AC008133.2-201ENST00000624540 351 ntBASIC2.67□□□□□ -1.98
CHMP3Q9Y3E7 RNU6-1313P-201ENST00000362622 102 ntBASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 Y_RNA.95-201ENST00000363079 95 ntBASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 Y_RNA.190-201ENST00000363964 101 ntBASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 UBL5P1-201ENST00000507979 193 ntBASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 AP003327.1-201ENST00000529684 127 ntBASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 MIR5694-201ENST00000581190 76 ntBASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 U1.36-201ENST00000620684 176 ntBASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP3Q9Y3E7 RNU6-1152P-201ENST00000384576 107 ntBASIC2.65□□□□□ -1.99
CHMP3Q9Y3E7 MIR1289-2-201ENST00000408360 111 ntBASIC2.65□□□□□ -1.99
CHMP3Q9Y3E7 MRPL35P3-201ENST00000421557 364 ntBASIC2.65□□□□□ -1.99
CHMP3Q9Y3E7 AC090844.1-201ENST00000422019 156 ntBASIC2.65□□□□□ -1.99
CHMP3Q9Y3E7 SNORA31.11-201ENST00000516528 139 ntBASIC2.65□□□□□ -1.99
CHMP3Q9Y3E7 MIR376B-201ENST00000614515 100 ntBASIC2.65□□□□□ -1.99
CHMP3Q9Y3E7 MIR219B-201ENST00000637023 88 ntBASIC2.65□□□□□ -1.99
CHMP3Q9Y3E7 SNORD114-1-201ENST00000362705 72 ntBASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 SNORD115-35-201ENST00000365122 82 ntBASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 RNU6-1067P-201ENST00000384752 107 ntBASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 MIR206-201ENST00000384872 86 ntBASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 RNU6-1275P-201ENST00000391087 107 ntBASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 AC108729.3-201ENST00000513484 108 ntBASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 MIR548AO-201ENST00000579992 96 ntBASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
CHMP3Q9Y3E7 Y_RNA.73-201ENST00000362910 113 ntBASIC2.63□□□□□ -1.99
CHMP3Q9Y3E7 RNU6-602P-201ENST00000411155 105 ntBASIC2.63□□□□□ -1.99
CHMP3Q9Y3E7 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.63□□□□□ -1.99
CHMP3Q9Y3E7 RNU7-2P-201ENST00000516096 62 ntBASIC2.63□□□□□ -1.99
CHMP3Q9Y3E7 RNU7-43P-201ENST00000516554 64 ntBASIC2.63□□□□□ -1.99
CHMP3Q9Y3E7 MIR7843-201ENST00000622274 79 ntBASIC2.63□□□□□ -1.99
CHMP3Q9Y3E7 Z97988.1-201ENST00000637697 135 ntBASIC2.63□□□□□ -1.99
CHMP3Q9Y3E7 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 MIRLET7G-201ENST00000362280 84 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 SNORA6-201ENST00000384033 151 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 MIR520C-201ENST00000385005 87 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 AC109327.2-201ENST00000448339 378 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 SNORD67.1-201ENST00000516618 108 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 RNU7-35P-201ENST00000517174 62 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 Y_RNA.783-201ENST00000613546 102 ntBASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
CHMP3Q9Y3E7 RNU6-360P-201ENST00000390944 104 ntBASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 AL451046.2-201ENST00000403074 277 ntBASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 AC019129.1-201ENST00000403786 261 ntBASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 RNU7-41P-201ENST00000515917 61 ntBASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 RNU6-1006P-201ENST00000516998 103 ntBASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 DEFB122-202ENST00000569013 197 ntBASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
CHMP3Q9Y3E7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 RNU6-1123P-201ENST00000362347 106 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 MIR194-1-201ENST00000384892 85 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 MIR504-201ENST00000385065 83 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 SNORA48.3-201ENST00000391081 134 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 AC055731.1-201ENST00000474387 401 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 AC022137.1-201ENST00000483735 151 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 Y_RNA.705-201ENST00000516862 110 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 snoMBII-202.2-201ENST00000517263 86 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 AC121758.2-201ENST00000553271 193 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 MIR4529-201ENST00000578110 78 ntBASIC2.6□□□□□ -1.99
CHMP3Q9Y3E7 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.59□□□□□ -1.99
CHMP3Q9Y3E7 RNA5SP276-201ENST00000362580 94 ntBASIC2.59□□□□□ -1.99
CHMP3Q9Y3E7 MIR34C-201ENST00000384831 77 ntBASIC2.59□□□□□ -1.99
CHMP3Q9Y3E7 RNU6-887P-201ENST00000410660 100 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 173.6 ms