Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SNORD116-19-201ENST00000384729 92 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 RNU2-51P-201ENST00000410708 197 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-1054P-201ENST00000411293 104 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-1234P-201ENST00000516877 103 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-165P-201ENST00000517170 99 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 MIR3152-201ENST00000579801 74 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 MIR3192-201ENST00000584920 77 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 MIR4781-201ENST00000585250 76 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 MIR337-201ENST00000362281 93 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-508P-201ENST00000363231 103 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.294-201ENST00000364916 102 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.651-201ENST00000459380 103 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 RNU5E-3P-201ENST00000515913 68 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 AC068338.1-201ENST00000565567 176 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 MIR8065-201ENST00000620577 100 ntBASIC1.59□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-647P-201ENST00000364243 107 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.280-201ENST00000364765 112 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 RNY1P6-201ENST00000384193 109 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 SNORA22C-201ENST00000384614 134 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-893P-201ENST00000458841 100 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 RN7SKP179-201ENST00000516126 217 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-1333P-201ENST00000516162 93 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 RNU11-2P-201ENST00000516898 142 ntBASIC1.58□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.261-201ENST00000364631 102 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 SNORA17.3-201ENST00000391159 129 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 AC009474.2-201ENST00000451383 136 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 RPS29P23-201ENST00000458635 123 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-659P-201ENST00000516454 104 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 CYP3A52P-201ENST00000563326 91 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 MIR4303-201ENST00000581299 66 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 AL020996.3-201ENST00000606617 222 ntBASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-235P-201ENST00000362644 107 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 RNA5SP205-201ENST00000364653 136 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.466-201ENST00000384294 113 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-1319P-201ENST00000390855 104 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-747P-201ENST00000390928 104 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-241P-201ENST00000391148 104 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-177P-201ENST00000411257 104 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 MIR8055-201ENST00000610739 97 ntBASIC1.56□□□□□ -2.16
LIMCH1Q9UPQ0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 RNA5SP264-201ENST00000363115 107 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-913P-201ENST00000390913 95 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.617-201ENST00000410920 90 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 AC108667.1-201ENST00000428618 249 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 AC245047.7-201ENST00000440265 293 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 SNORA31.4-201ENST00000516049 129 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 MIR548AO-201ENST00000579992 96 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 AL359881.1-201ENST00000602916 267 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 snoU13.31-201ENST00000607291 104 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 AC021613.1-201ENST00000623880 111 ntBASIC1.55□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-349P-201ENST00000362402 107 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 SNORA1.1-201ENST00000364671 133 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-690P-201ENST00000365242 106 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.354-201ENST00000365448 111 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.430-201ENST00000384081 110 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.563-201ENST00000384707 108 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 RNU1-123P-201ENST00000458950 160 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 RNU7-107P-201ENST00000459121 61 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 RN7SKP19-201ENST00000516016 252 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 Y_RNA.712-201ENST00000517011 92 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 AP003716.2-201ENST00000528260 108 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 AC133485.4-201ENST00000561835 220 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 AC138907.4-201ENST00000570107 226 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 PRELID3BP2-201ENST00000605362 201 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 Z97988.1-201ENST00000637697 135 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 ZNF209P-201ENST00000593450 2304 ntBASIC1.54□□□□□ -2.16
LIMCH1Q9UPQ0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
LIMCH1Q9UPQ0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.53□□□□□ -2.16
LIMCH1Q9UPQ0 RNU6-396P-201ENST00000365369 105 ntBASIC1.53□□□□□ -2.16
LIMCH1Q9UPQ0 RPS3AP1-201ENST00000413190 320 ntBASIC1.53□□□□□ -2.16
LIMCH1Q9UPQ0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.53□□□□□ -2.16
LIMCH1Q9UPQ0 MIR6717-201ENST00000622747 73 ntBASIC1.53□□□□□ -2.16
LIMCH1Q9UPQ0 MIR103A2-201ENST00000362154 78 ntBASIC1.52□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-1290P-201ENST00000362957 109 ntBASIC1.52□□□□□ -2.17
LIMCH1Q9UPQ0 Y_RNA.355-201ENST00000365462 98 ntBASIC1.52□□□□□ -2.17
LIMCH1Q9UPQ0 MIR499A-201ENST00000384903 122 ntBASIC1.52□□□□□ -2.17
LIMCH1Q9UPQ0 snoU13.25-201ENST00000458945 104 ntBASIC1.52□□□□□ -2.17
LIMCH1Q9UPQ0 MIR2115-201ENST00000516657 100 ntBASIC1.52□□□□□ -2.17
LIMCH1Q9UPQ0 AL161722.3-201ENST00000605789 2983 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 RNY1P10-201ENST00000363268 113 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 SNORD38B-201ENST00000384690 67 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA26.6-201ENST00000391256 115 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 AC048334.1-201ENST00000477975 159 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 AC004223.1-201ENST00000479840 271 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA31.2-201ENST00000516019 134 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-1061P-201ENST00000516530 99 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 AC108081.1-201ENST00000604358 221 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 AL137067.1-201ENST00000615933 120 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 SNORD38B-202ENST00000625943 69 ntBASIC1.51□□□□□ -2.17
LIMCH1Q9UPQ0 RNU6-834P-201ENST00000362367 110 ntBASIC1.5□□□□□ -2.17
LIMCH1Q9UPQ0 SNORA25.3-201ENST00000363205 127 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 193.7 ms