Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU7-45P-201ENST00000459460 63 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 AC113410.1-201ENST00000505029 247 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 MIR4764-201ENST00000580680 88 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 AL359821.1-201ENST00000605519 182 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 AC106754.2-201ENST00000623006 233 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 AL162726.3-218ENST00000636401 95 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 RNU6-756P-201ENST00000383997 107 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 RNU6-913P-201ENST00000390913 95 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 AL451046.2-201ENST00000403074 277 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 RPS3AP1-201ENST00000413190 320 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 AC104435.1-201ENST00000483483 166 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 TRMT112P2-201ENST00000512910 132 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 SNORA25.15-201ENST00000516487 89 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 Y_RNA.694-201ENST00000516677 117 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 AC022254.1-201ENST00000567857 235 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 AC008133.2-201ENST00000624540 351 ntBASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC87Q9NVE4 SNORD115-19-201ENST00000363098 82 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 SNORD115-18-201ENST00000363293 82 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 SNORD115-17-201ENST00000364612 82 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.328-201ENST00000365208 113 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.354-201ENST00000365448 111 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 SNORA51.5-201ENST00000384126 131 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 MIR513A1-201ENST00000385138 129 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 MIR8055-201ENST00000610739 97 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 MIR6895-201ENST00000613497 78 ntBASIC2.46□□□□□ -2.02
CCDC87Q9NVE4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 AP000648.3-201ENST00000623539 4507 ntBASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 SNORA25.9-201ENST00000365087 128 ntBASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 AC245517.4-201ENST00000448601 281 ntBASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 RNA5SP170-201ENST00000517150 101 ntBASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 MIR4713-201ENST00000582691 75 ntBASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 AC087741.2-201ENST00000619415 172 ntBASIC2.45□□□□□ -2.02
CCDC87Q9NVE4 MIRLET7G-201ENST00000362280 84 ntBASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.78-201ENST00000362970 110 ntBASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.171-201ENST00000363760 102 ntBASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 SNORA1.1-201ENST00000364671 133 ntBASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 RNA5SP259-201ENST00000365541 109 ntBASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 SNORD77B-201ENST00000391112 67 ntBASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 AL513534.2-201ENST00000603836 250 ntBASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.507-201ENST00000384500 99 ntBASIC2.43□□□□□ -2.02
CCDC87Q9NVE4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
CCDC87Q9NVE4 AP1B1P2-201ENST00000416196 106 ntBASIC2.43□□□□□ -2.02
CCDC87Q9NVE4 RNA5SP33-201ENST00000516687 98 ntBASIC2.43□□□□□ -2.02
CCDC87Q9NVE4 AC095038.3-201ENST00000634439 195 ntBASIC2.43□□□□□ -2.02
CCDC87Q9NVE4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 RNU6-1298P-201ENST00000362456 101 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.43-201ENST00000362670 111 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 SNORA6-201ENST00000384033 151 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.544-201ENST00000384650 113 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 MIR9-3-201ENST00000385084 90 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 RNU6-816P-201ENST00000390914 107 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 RNU6-1268P-201ENST00000391214 107 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 RNU6-1239P-201ENST00000391310 107 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 RNU4-62P-201ENST00000410125 130 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 RPL39P25-201ENST00000449384 154 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 Y_RNA.677-201ENST00000516401 85 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 RNU6-1258P-201ENST00000516911 111 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 AC121758.2-201ENST00000553271 193 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 AL357312.1-201ENST00000603879 298 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 Z97988.1-201ENST00000637697 135 ntBASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC87Q9NVE4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
CCDC87Q9NVE4 MIR17-201ENST00000385012 84 ntBASIC2.41□□□□□ -2.02
CCDC87Q9NVE4 MIR518E-201ENST00000385252 88 ntBASIC2.41□□□□□ -2.02
CCDC87Q9NVE4 RNU6-1190P-201ENST00000410811 104 ntBASIC2.41□□□□□ -2.02
CCDC87Q9NVE4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.41□□□□□ -2.02
CCDC87Q9NVE4 MIR8074-201ENST00000615081 81 ntBASIC2.41□□□□□ -2.02
CCDC87Q9NVE4 AC084768.2-201ENST00000622736 221 ntBASIC2.41□□□□□ -2.02
CCDC87Q9NVE4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
CCDC87Q9NVE4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC87Q9NVE4 RNU6-537P-201ENST00000517277 103 ntBASIC2.4□□□□□ -2.03
CCDC87Q9NVE4 MIR4299-201ENST00000577899 72 ntBASIC2.4□□□□□ -2.03
CCDC87Q9NVE4 MIR3618-201ENST00000580330 88 ntBASIC2.4□□□□□ -2.03
CCDC87Q9NVE4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.4□□□□□ -2.03
CCDC87Q9NVE4 MIR4251-201ENST00000635819 61 ntBASIC2.4□□□□□ -2.03
CCDC87Q9NVE4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 RNU6-363P-201ENST00000362895 105 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 RNA5SP160-201ENST00000364866 120 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 Y_RNA.470-201ENST00000384307 117 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 AC015688.6-201ENST00000577737 104 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 SNORA77B-201ENST00000578179 125 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 MIR5694-201ENST00000581190 76 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 FAM71BP1-201ENST00000604431 523 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 Y_RNA.818-201ENST00000618813 71 ntBASIC2.39□□□□□ -2.03
CCDC87Q9NVE4 RNA5SP48-201ENST00000363969 126 ntBASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 RNU6-439P-201ENST00000384188 106 ntBASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 MIR489-201ENST00000384923 84 ntBASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 RPS29P11-201ENST00000496507 171 ntBASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 CYP3A52P-201ENST00000563326 91 ntBASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 MIR548AE2-201ENST00000583456 67 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms