Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL133373.1-201ENST00000497098 94 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 RNU6-1234P-201ENST00000516877 103 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 CYP3A52P-201ENST00000563326 91 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 MIR8055-201ENST00000610739 97 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
TDP1Q9NUW8 Y_RNA.71-201ENST00000362892 104 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 RNU6-647P-201ENST00000364243 107 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 SNORD113-1-201ENST00000365321 69 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 Y_RNA.366-201ENST00000365540 102 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 SNORA19-201ENST00000384737 128 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 RNU6-1319P-201ENST00000390855 104 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 RNU6-747P-201ENST00000390928 104 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 RNU6-241P-201ENST00000391148 104 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 RNU6-177P-201ENST00000411257 104 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 AP003716.2-201ENST00000528260 108 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 AC133485.4-201ENST00000561835 220 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 AC138907.4-201ENST00000570107 226 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 MIR6717-201ENST00000622747 73 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 ZNF209P-201ENST00000593450 2304 ntBASIC1.57□□□□□ -2.16
TDP1Q9NUW8 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.57□□□□□ -2.16
TDP1Q9NUW8 RNU6-80P-201ENST00000384195 107 ntBASIC1.56□□□□□ -2.16
TDP1Q9NUW8 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.56□□□□□ -2.16
TDP1Q9NUW8 MIR1302-7-201ENST00000408841 72 ntBASIC1.56□□□□□ -2.16
TDP1Q9NUW8 RNU1-92P-201ENST00000517017 135 ntBASIC1.56□□□□□ -2.16
TDP1Q9NUW8 IGKV1-22-201ENST00000524313 326 ntBASIC1.56□□□□□ -2.16
TDP1Q9NUW8 AL137067.1-201ENST00000615933 120 ntBASIC1.56□□□□□ -2.16
TDP1Q9NUW8 Z97988.1-201ENST00000637697 135 ntBASIC1.56□□□□□ -2.16
TDP1Q9NUW8 SNORA7.1-201ENST00000363750 139 ntBASIC1.55□□□□□ -2.16
TDP1Q9NUW8 SNORA1.1-201ENST00000364671 133 ntBASIC1.55□□□□□ -2.16
TDP1Q9NUW8 RNA5SP261-201ENST00000410536 106 ntBASIC1.55□□□□□ -2.16
TDP1Q9NUW8 RNU6-1054P-201ENST00000411293 104 ntBASIC1.55□□□□□ -2.16
TDP1Q9NUW8 AC090844.1-201ENST00000422019 156 ntBASIC1.55□□□□□ -2.16
TDP1Q9NUW8 MIR3152-201ENST00000579801 74 ntBASIC1.55□□□□□ -2.16
TDP1Q9NUW8 AC021443.1-201ENST00000604478 211 ntBASIC1.55□□□□□ -2.16
TDP1Q9NUW8 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
TDP1Q9NUW8 RNA5SP264-201ENST00000363115 107 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.54□□□□□ -2.16
TDP1Q9NUW8 RNA5SP144-201ENST00000410846 116 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 Y_RNA.617-201ENST00000410920 90 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 AL606753.1-201ENST00000427435 87 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 AL354695.1-201ENST00000427935 228 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 RNU7-107P-201ENST00000459121 61 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 AC048334.1-201ENST00000477975 159 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 RN7SKP19-201ENST00000516016 252 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 RNU6-970P-201ENST00000516312 107 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.54□□□□□ -2.16
TDP1Q9NUW8 MIR4421-201ENST00000578133 69 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 MIR6841-201ENST00000637129 72 ntBASIC1.54□□□□□ -2.16
TDP1Q9NUW8 MIR103A2-201ENST00000362154 78 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 Y_RNA.226-201ENST00000364337 114 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 SNORD116-14-201ENST00000383894 92 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 SNORD116-17-201ENST00000383929 92 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 Y_RNA.430-201ENST00000384081 110 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 SNORD116-15-201ENST00000384445 92 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 RNU6-1117P-201ENST00000384525 104 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 SNORD116-19-201ENST00000384729 92 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 MIR1304-201ENST00000408243 91 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 MIR1185-1-201ENST00000408598 86 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 POLR2J4-204ENST00000418424 324 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 AC245047.7-201ENST00000440265 293 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 MIR4305-201ENST00000583252 102 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 PRELID3BP2-201ENST00000605362 201 ntBASIC1.53□□□□□ -2.16
TDP1Q9NUW8 SNORA22.1-201ENST00000362701 134 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.327-201ENST00000365201 102 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.525-201ENST00000384570 113 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 RPS3AP1-201ENST00000413190 320 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 RNU7-164P-201ENST00000459221 62 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 SNORA31.2-201ENST00000516019 134 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 RNU6-772P-201ENST00000516042 105 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 RNU6-781P-201ENST00000516377 101 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 U2.22-201ENST00000636441 106 ntBASIC1.52□□□□□ -2.17
TDP1Q9NUW8 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.127-201ENST00000363386 109 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 RNU6-997P-201ENST00000384725 107 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 RNU6-602P-201ENST00000411155 105 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 RNU2-35P-201ENST00000516446 142 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 RNU6-659P-201ENST00000516454 104 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 RNU6-1061P-201ENST00000516530 99 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 AL365222.1-201ENST00000614661 98 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 MIR8070-201ENST00000616510 88 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 MIR8065-201ENST00000620577 100 ntBASIC1.51□□□□□ -2.17
TDP1Q9NUW8 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.51□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.298-201ENST00000364960 107 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 SNORD58C-201ENST00000365223 64 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 RNU6-22P-201ENST00000384355 107 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 AC008267.6-201ENST00000441664 139 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.5□□□□□ -2.17
TDP1Q9NUW8 RNU6-893P-201ENST00000458841 100 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 AC023790.1-201ENST00000482174 347 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 RNU7-123P-201ENST00000515911 60 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 RNU6-1333P-201ENST00000516162 93 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 RNY4P20-201ENST00000516678 93 ntBASIC1.5□□□□□ -2.17
TDP1Q9NUW8 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.5□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.261-201ENST00000364631 102 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 RNU6-396P-201ENST00000365369 105 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 SNORD38B-201ENST00000384690 67 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 AL022718.1-201ENST00000412004 84 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 MIR2115-201ENST00000516657 100 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 162.6 ms