Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 Y_RNA.199-201ENST00000364014 102 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 RNU5E-4P-201ENST00000364931 120 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 AL606845.1-201ENST00000404881 255 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 RNU2-55P-201ENST00000411146 174 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 AC022028.1-201ENST00000412054 408 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 AL512326.2-201ENST00000426359 151 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 RNU6-561P-201ENST00000516222 102 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 RNA5SP268-201ENST00000516828 124 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 RNU6-570P-201ENST00000517051 105 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 RNU6-1137P-201ENST00000517073 99 ntBASIC0.06□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.153-201ENST00000363615 91 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.275-201ENST00000364726 110 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 SNORA26-201ENST00000391286 122 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 RNU6-469P-201ENST00000516253 101 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 RNA5SP153-201ENST00000516498 76 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 SNORA31.14-201ENST00000516728 116 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 AC112693.2-201ENST00000556538 232 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 MIR4491-201ENST00000581087 68 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 AL160413.1-201ENST00000622780 310 ntBASIC0.05□□□□□ -2.4
EXOSC4Q9NPD3 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.32-201ENST00000362589 110 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 RNU6-653P-201ENST00000363074 106 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.128-201ENST00000363391 112 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.158-201ENST00000363651 101 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 MIR598-201ENST00000384868 97 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.588-201ENST00000391254 102 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 RNU2-59P-201ENST00000410482 191 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 RNU6-1203P-201ENST00000410703 110 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 SUMO1P3-201ENST00000439961 304 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.711-201ENST00000516993 102 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 AC141846.1-201ENST00000568348 142 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 MIR4680-201ENST00000580906 66 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 MIR6082-201ENST00000613604 109 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 AC091932.4-201ENST00000623386 200 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 MIR4315-1-201ENST00000636800 73 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 MIR4315-2-201ENST00000640925 73 ntBASIC0.04□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.276-201ENST00000364732 109 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.423-201ENST00000384057 113 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 SNORA72.6-201ENST00000384520 129 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 AC096949.1-201ENST00000412047 152 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 SEPT7P4-201ENST00000437076 306 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 MTATP6P23-201ENST00000440153 476 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 MTND5P34-201ENST00000568888 325 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 AC097639.2-201ENST00000603159 172 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 MIR7107-201ENST00000611489 80 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 MIR6755-201ENST00000619993 66 ntBASIC0.03□□□□□ -2.4
EXOSC4Q9NPD3 Y_RNA.44-201ENST00000362676 108 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 RNA5SP214-201ENST00000363378 118 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 RNU6-187P-201ENST00000384139 106 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 RNA5SP261-201ENST00000410536 106 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 RNU7-80P-201ENST00000459562 61 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 MIR3171-201ENST00000584270 74 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 AC134503.1-201ENST00000633048 54 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 AC010487.4-201ENST00000637027 61 ntBASIC0.02□□□□□ -2.41
EXOSC4Q9NPD3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 SNORD114-9-201ENST00000364370 72 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.237-201ENST00000364439 102 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.430-201ENST00000384081 110 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 RNY3P5-201ENST00000384127 102 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 MIR616-201ENST00000385293 97 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 PCNPP3-201ENST00000393579 471 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.618-201ENST00000410949 107 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 RNU6-1143P-201ENST00000516125 104 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 SNORA25.16-201ENST00000516741 121 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 AL442663.2-201ENST00000554385 511 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 MIR3152-201ENST00000579801 74 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 MIR4514-201ENST00000581410 57 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 MIR5197-201ENST00000583721 112 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.01□□□□□ -2.41
EXOSC4Q9NPD3 RNU4-67P-201ENST00000364569 141 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.512-201ENST00000384518 102 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 RNU6-291P-201ENST00000384720 107 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 MIR548P-201ENST00000408336 84 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 AC113618.1-201ENST00000416747 285 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 RNA5SP227-201ENST00000516184 113 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 AP003327.1-201ENST00000529684 127 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 AC104408.1-201ENST00000605241 170 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 AL442067.1-201ENST00000613261 223 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 AL365265.1-201ENST00000621045 234 ntBASIC0□□□□□ -2.41
EXOSC4Q9NPD3 IST1-227ENST00000626438 126 ntTSL 5 BASIC0□□□□□ -2.41
EXOSC4Q9NPD3 SNORA22.1-201ENST00000362701 134 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 RNY1-201ENST00000364228 113 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.460-201ENST00000384255 102 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 SNORA18-201ENST00000384416 132 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 SNORA20-201ENST00000384662 132 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 RNU6-535P-201ENST00000384722 107 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 SNORD2.1-201ENST00000458762 69 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 snoU13.18-201ENST00000459483 104 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 AC020661.2-201ENST00000560114 134 ntBASIC-0.01□□□□□ -2.41
EXOSC4Q9NPD3 AC021613.1-201ENST00000623880 111 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms