Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 MIR6779-201ENST00000617283 64 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 MIR342-201ENST00000362212 99 ntBASIC1.31□□□□□ -2.2
HIPK3Q9H422 MIR598-201ENST00000384868 97 ntBASIC1.31□□□□□ -2.2
HIPK3Q9H422 RNU7-73P-201ENST00000458743 63 ntBASIC1.31□□□□□ -2.2
HIPK3Q9H422 RNU2-11P-201ENST00000459191 187 ntBASIC1.31□□□□□ -2.2
HIPK3Q9H422 snoU13.16-201ENST00000459350 104 ntBASIC1.31□□□□□ -2.2
HIPK3Q9H422 AC087343.1-201ENST00000477341 475 ntBASIC1.31□□□□□ -2.2
HIPK3Q9H422 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.31□□□□□ -2.2
HIPK3Q9H422 MIR4295-201ENST00000585286 85 ntBASIC1.31□□□□□ -2.2
HIPK3Q9H422 Y_RNA.454-201ENST00000384224 113 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 RNU6-342P-201ENST00000384521 104 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 AC245047.7-201ENST00000440265 293 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 AC048334.1-201ENST00000477975 159 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 RNA5SP236-201ENST00000516169 116 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 SNORA25.12-201ENST00000516202 82 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 RNU7-53P-201ENST00000516705 60 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 RNU2-60P-201ENST00000517290 128 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 AP003716.2-201ENST00000528260 108 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 MIR8065-201ENST00000620577 100 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 AC091932.4-201ENST00000623386 200 ntBASIC1.3□□□□□ -2.2
HIPK3Q9H422 SNORA25.3-201ENST00000363205 127 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 Y_RNA.488-201ENST00000384403 102 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 RNU6-125P-201ENST00000384505 107 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 MIR569-201ENST00000385228 96 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 RNU6-913P-201ENST00000390913 95 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 SNORA31.2-201ENST00000516019 134 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 RNU6-346P-201ENST00000516288 111 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 RNU7-70P-201ENST00000516941 66 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 MIR548AO-201ENST00000579992 96 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 PRELID3BP2-201ENST00000605362 201 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.29□□□□□ -2.2
HIPK3Q9H422 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.29□□□□□ -2.2
HIPK3Q9H422 MIR302B-201ENST00000362188 73 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 RNA5SP264-201ENST00000363115 107 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 RNU1-133P-201ENST00000364867 167 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 RNU6-460P-201ENST00000391158 108 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 MIR1302-7-201ENST00000408841 72 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 SNORA31.4-201ENST00000516049 129 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 RNU6-113P-201ENST00000516653 101 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.28□□□□□ -2.2
HIPK3Q9H422 AL596211.1-201ENST00000569873 2277 ntBASIC1.28□□□□□ -2.2
HIPK3Q9H422 Y_RNA.120-201ENST00000363304 110 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 SNORA25.8-201ENST00000364831 128 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 SNORD18B-201ENST00000365659 72 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 RNU6-746P-201ENST00000384112 109 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 AL392103.1-201ENST00000447000 198 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 RPS23P4-201ENST00000487908 423 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 AC068338.1-201ENST00000565567 176 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 MIR3133-201ENST00000583157 78 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 MIR8055-201ENST00000610739 97 ntBASIC1.27□□□□□ -2.21
HIPK3Q9H422 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.26□□□□□ -2.21
HIPK3Q9H422 RNU6-774P-201ENST00000363238 107 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 MIR1185-1-201ENST00000408598 86 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 MTATP6P21-201ENST00000440681 189 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 RNU6-426P-201ENST00000516464 97 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 Y_RNA.686-201ENST00000516548 134 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 Y_RNA.703-201ENST00000516846 111 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 AC019288.1-201ENST00000557918 224 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 AL020996.3-201ENST00000606617 222 ntBASIC1.26□□□□□ -2.21
HIPK3Q9H422 MIR103A2-201ENST00000362154 78 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 Y_RNA.36-201ENST00000362602 112 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 RNA5SP325-201ENST00000363756 130 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 Y_RNA.343-201ENST00000365354 112 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 Y_RNA.363-201ENST00000365529 113 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 Y_RNA.420-201ENST00000384043 110 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 AL603914.1-201ENST00000401964 204 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 RNA5SP272-201ENST00000516095 111 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 RN7SKP179-201ENST00000516126 217 ntBASIC1.25□□□□□ -2.21
HIPK3Q9H422 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.25□□□□□ -2.21
HIPK3Q9H422 RNU6-508P-201ENST00000363231 103 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 RNU6-309P-201ENST00000364573 106 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 RNU6-915P-201ENST00000364943 103 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 SNORA20-201ENST00000384662 132 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 SNORA26.6-201ENST00000391256 115 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 RNU6-1190P-201ENST00000410811 104 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 AC090844.1-201ENST00000422019 156 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 HMGN1P33-201ENST00000432945 451 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 RNU7-45P-201ENST00000459460 63 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 Y_RNA.690-201ENST00000516603 95 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 RNU11-2P-201ENST00000516898 142 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.24□□□□□ -2.21
HIPK3Q9H422 AP001340.1-201ENST00000624405 217 ntBASIC1.24□□□□□ -2.21
HIPK3Q9H422 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
HIPK3Q9H422 RNU6-349P-201ENST00000362402 107 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 RNY1P6-201ENST00000384193 109 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 Y_RNA.568-201ENST00000384742 113 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 MIR618-201ENST00000385287 98 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 RNU6-910P-201ENST00000390844 107 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 RNU6-1319P-201ENST00000390855 104 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 RNU6-747P-201ENST00000390928 104 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 RNU6-241P-201ENST00000391148 104 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 MIR548M-201ENST00000408260 86 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 RNU6-177P-201ENST00000411257 104 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.23□□□□□ -2.21
HIPK3Q9H422 AP001328.1-201ENST00000528550 176 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 HSPE1P19-201ENST00000603327 295 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 Z97988.1-201ENST00000637697 135 ntBASIC1.23□□□□□ -2.21
HIPK3Q9H422 RNA5SP327-201ENST00000362494 101 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 RNU6-396P-201ENST00000365369 105 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 196.2 ms