Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 Y_RNA.534-201ENST00000384599 112 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 AC005520.4-201ENST00000604337 90 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 AC084781.2-201ENST00000615568 161 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 U4.7-201ENST00000638126 106 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 AP000907.4-201ENST00000604143 237 ntBASIC-3.5□□□□□ -2.97
VPS13AQ96RL7 AC139792.3-201ENST00000623525 224 ntBASIC-3.5□□□□□ -2.97
VPS13AQ96RL7 AC012306.1-201ENST00000423267 114 ntBASIC-3.5□□□□□ -2.97
VPS13AQ96RL7 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-3.5□□□□□ -2.97
VPS13AQ96RL7 AC021443.1-201ENST00000604478 211 ntBASIC-3.5□□□□□ -2.97
VPS13AQ96RL7 SNORD63B-201ENST00000411005 70 ntBASIC-3.51□□□□□ -2.97
VPS13AQ96RL7 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-3.51□□□□□ -2.97
VPS13AQ96RL7 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC-3.51□□□□□ -2.97
VPS13AQ96RL7 RNU6-1287P-201ENST00000362914 107 ntBASIC-3.51□□□□□ -2.97
VPS13AQ96RL7 AL049829.1-201ENST00000465411 156 ntBASIC-3.51□□□□□ -2.97
VPS13AQ96RL7 CYP3A54P-201ENST00000566950 75 ntBASIC-3.51□□□□□ -2.97
VPS13AQ96RL7 AL158063.1-201ENST00000615349 536 ntBASIC-3.51□□□□□ -2.97
VPS13AQ96RL7 Y_RNA.621-201ENST00000411065 96 ntBASIC-3.52□□□□□ -2.97
VPS13AQ96RL7 AL139421.1-201ENST00000423010 169 ntBASIC-3.52□□□□□ -2.97
VPS13AQ96RL7 Y_RNA.699-201ENST00000516803 93 ntBASIC-3.52□□□□□ -2.97
VPS13AQ96RL7 SNORA19.1-201ENST00000410656 129 ntBASIC-3.52□□□□□ -2.97
VPS13AQ96RL7 AC091179.3-201ENST00000474761 144 ntBASIC-3.52□□□□□ -2.97
VPS13AQ96RL7 RNU6-345P-201ENST00000517001 107 ntBASIC-3.52□□□□□ -2.97
VPS13AQ96RL7 MIR519A1-201ENST00000385257 85 ntBASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 SNORA31.3-201ENST00000516029 96 ntBASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 RNU6-1315P-201ENST00000517187 99 ntBASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 AL020997.3-201ENST00000602843 359 ntBASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 AC114982.2-201ENST00000461396 358 ntBASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-3.53□□□□□ -2.97
VPS13AQ96RL7 RNU6-524P-201ENST00000384270 107 ntBASIC-3.53□□□□□ -2.98
VPS13AQ96RL7 AL590004.1-201ENST00000405321 300 ntBASIC-3.53□□□□□ -2.98
VPS13AQ96RL7 RNU7-154P-201ENST00000516194 62 ntBASIC-3.53□□□□□ -2.98
VPS13AQ96RL7 AC090502.2-201ENST00000549267 280 ntBASIC-3.53□□□□□ -2.98
VPS13AQ96RL7 RNU6-816P-201ENST00000390914 107 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 RNU6-1268P-201ENST00000391214 107 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 RNU6-1239P-201ENST00000391310 107 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 RNU6-914P-201ENST00000516749 109 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 RNU6-597P-201ENST00000365620 102 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.663-201ENST00000516043 101 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 RNU7-79P-201ENST00000516082 62 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 AC141846.1-201ENST00000568348 142 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 AC103706.2-201ENST00000638080 240 ntBASIC-3.54□□□□□ -2.98
VPS13AQ96RL7 MIR6717-201ENST00000622747 73 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 AC018865.2-201ENST00000423631 129 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 AC073415.1-201ENST00000449240 153 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 MTCO3P42-201ENST00000509488 518 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.507-201ENST00000384500 99 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 RNU6-696P-201ENST00000390834 107 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 RNU6-75P-201ENST00000515944 104 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.809-201ENST00000516058 95 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 AC004467.1-201ENST00000615678 330 ntBASIC-3.55□□□□□ -2.98
VPS13AQ96RL7 RNU6-268P-201ENST00000364174 107 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 RNU6-1163P-201ENST00000364516 107 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 RNU6-1177P-201ENST00000391058 104 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.633-201ENST00000459107 95 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.689-201ENST00000516589 107 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 AC008873.1-201ENST00000625051 138 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.578-201ENST00000390903 88 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 AC091951.2-201ENST00000500762 203 ntBASIC-3.56□□□□□ -2.98
VPS13AQ96RL7 RNU6-1111P-201ENST00000391118 107 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 MTND1P33-201ENST00000446251 917 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 MIR4500-201ENST00000579472 76 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 AC079140.5-201ENST00000507882 310 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.718-201ENST00000517110 102 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 AC007671.2-201ENST00000637344 619 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 AL590084.2-201ENST00000401481 382 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 AC108729.2-201ENST00000476543 840 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 UBE2V1P12-201ENST00000503954 474 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 AC127459.3-201ENST00000624328 466 ntBASIC-3.57□□□□□ -2.98
VPS13AQ96RL7 RNU6-136P-201ENST00000384663 107 ntBASIC-3.58□□□□□ -2.98
VPS13AQ96RL7 MTND4P18-201ENST00000447010 465 ntBASIC-3.58□□□□□ -2.98
VPS13AQ96RL7 U6.107-201ENST00000637108 79 ntBASIC-3.58□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.24-201ENST00000362508 103 ntBASIC-3.58□□□□□ -2.98
VPS13AQ96RL7 RNU6-478P-201ENST00000363904 110 ntBASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 RNU4-70P-201ENST00000384579 139 ntBASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 RNU6-853P-201ENST00000364306 107 ntBASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.281-201ENST00000364774 94 ntBASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.63-201ENST00000362841 102 ntBASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.207-201ENST00000364142 106 ntBASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 Y_RNA.395-201ENST00000383945 109 ntBASIC-3.59□□□□□ -2.98
VPS13AQ96RL7 RNU6-1313P-201ENST00000362622 102 ntBASIC-3.6□□□□□ -2.99
VPS13AQ96RL7 MTND1P36-201ENST00000522384 936 ntBASIC-3.6□□□□□ -2.99
VPS13AQ96RL7 AP000720.1-201ENST00000625091 483 ntBASIC-3.6□□□□□ -2.99
VPS13AQ96RL7 RNU1-54P-201ENST00000517181 120 ntBASIC-3.6□□□□□ -2.99
VPS13AQ96RL7 LARP7P2-201ENST00000575306 125 ntBASIC-3.6□□□□□ -2.99
VPS13AQ96RL7 SNORD11B-201ENST00000607707 90 ntBASIC-3.6□□□□□ -2.99
VPS13AQ96RL7 SNORA40.5-201ENST00000391061 128 ntBASIC-3.61□□□□□ -2.99
VPS13AQ96RL7 Y_RNA.596-201ENST00000410462 109 ntBASIC-3.61□□□□□ -2.99
VPS13AQ96RL7 SNORA26.6-201ENST00000391256 115 ntBASIC-3.61□□□□□ -2.99
VPS13AQ96RL7 RNU6-377P-201ENST00000515965 102 ntBASIC-3.61□□□□□ -2.99
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms