Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR103A2-201ENST00000362154 78 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 RNA5SP289-201ENST00000362332 137 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 RNU6-106P-201ENST00000384405 107 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 SNORA67.4-201ENST00000384688 142 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 MIR1261-201ENST00000408659 82 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 RNA5SP237-201ENST00000410414 113 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC140Q96MF4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 RN7SKP88-201ENST00000516847 250 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 RNU6-165P-201ENST00000517170 99 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 MIR5009-201ENST00000578736 100 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 MIR3618-201ENST00000580330 88 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 7SK.8-201ENST00000612110 250 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 7SK.11-201ENST00000615477 250 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 MIR6715A-201ENST00000615929 79 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 7SK.13-201ENST00000622040 250 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 MIR6766-201ENST00000622641 72 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 AC064859.1-201ENST00000624741 174 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 AL162726.3-218ENST00000636401 95 ntBASIC1.79□□□□□ -2.12
CCDC140Q96MF4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC140Q96MF4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC140Q96MF4 RNA5SP264-201ENST00000363115 107 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 Y_RNA.155-201ENST00000363632 101 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 Y_RNA.309-201ENST00000365046 111 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 RNU6-147P-201ENST00000383983 107 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 SNORA70B-201ENST00000384210 135 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 RNU6-205P-201ENST00000390858 107 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 RNU6-554P-201ENST00000410466 106 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 RPS27P16-201ENST00000425758 201 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 AL031737.1-201ENST00000450125 223 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 AC079804.2-201ENST00000490376 200 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 RNU7-79P-201ENST00000516082 62 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 MIR4422-201ENST00000581938 83 ntBASIC1.78□□□□□ -2.12
CCDC140Q96MF4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC140Q96MF4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.78□□□□□ -2.12
CCDC140Q96MF4 Y_RNA.507-201ENST00000384500 99 ntBASIC1.77□□□□□ -2.13
CCDC140Q96MF4 MIR1302-5-201ENST00000408164 150 ntBASIC1.77□□□□□ -2.13
CCDC140Q96MF4 MIR1185-1-201ENST00000408598 86 ntBASIC1.77□□□□□ -2.13
CCDC140Q96MF4 SNORA7.5-201ENST00000410672 110 ntBASIC1.77□□□□□ -2.13
CCDC140Q96MF4 RN7SL274P-201ENST00000492268 272 ntBASIC1.77□□□□□ -2.13
CCDC140Q96MF4 MIR6516-201ENST00000630554 81 ntBASIC1.77□□□□□ -2.13
CCDC140Q96MF4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC140Q96MF4 Y_RNA.163-201ENST00000363702 113 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 MIR588-201ENST00000384900 83 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 AC048334.1-201ENST00000477975 159 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 RNA5SP402-201ENST00000517148 110 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 AP000753.3-201ENST00000604083 169 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 FAM71BP1-201ENST00000604431 523 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.76□□□□□ -2.13
CCDC140Q96MF4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC140Q96MF4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC140Q96MF4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
CCDC140Q96MF4 SNORD115-19-201ENST00000363098 82 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 U8.2-201ENST00000363156 134 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 SNORD115-18-201ENST00000363293 82 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 SNORD115-17-201ENST00000364612 82 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 Y_RNA.323-201ENST00000365157 109 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 MIR934-201ENST00000401241 83 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 RNA5SP95-201ENST00000410319 137 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 MIR1912-201ENST00000410389 80 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 MIR2115-201ENST00000516657 100 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC140Q96MF4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.75□□□□□ -2.13
CCDC140Q96MF4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC140Q96MF4 RNU6-654P-201ENST00000364373 107 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 RNU4-67P-201ENST00000364569 141 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 RNU6-409P-201ENST00000384114 104 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 SNORA51.5-201ENST00000384126 131 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 RNU2-40P-201ENST00000410833 196 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 RNU6-521P-201ENST00000516663 105 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 RNU7-35P-201ENST00000517174 62 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 AP003716.2-201ENST00000528260 108 ntBASIC1.74□□□□□ -2.13
CCDC140Q96MF4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC140Q96MF4 RNU6-363P-201ENST00000362895 105 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 RNU6-756P-201ENST00000383997 107 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 MIR605-201ENST00000385078 83 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 RNU4-53P-201ENST00000410828 140 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 AC245517.4-201ENST00000448601 281 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 snoU13.2-201ENST00000459201 104 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 RNU1-41P-201ENST00000516161 162 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 RNU1-48P-201ENST00000516400 162 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 RNU6-902P-201ENST00000517212 91 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 AC141557.1-201ENST00000540982 400 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 RNU6-94P-201ENST00000607728 107 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 AC105081.1-201ENST00000617727 106 ntBASIC1.73□□□□□ -2.13
CCDC140Q96MF4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC140Q96MF4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC140Q96MF4 MIR221-201ENST00000385135 110 ntBASIC1.72□□□□□ -2.13
CCDC140Q96MF4 RNU6-733P-201ENST00000410759 104 ntBASIC1.72□□□□□ -2.13
CCDC140Q96MF4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC140Q96MF4 SNORD67.1-201ENST00000516618 108 ntBASIC1.72□□□□□ -2.13
CCDC140Q96MF4 AC024614.2-201ENST00000577584 372 ntBASIC1.72□□□□□ -2.13
CCDC140Q96MF4 MIR3613-201ENST00000579844 87 ntBASIC1.72□□□□□ -2.13
CCDC140Q96MF4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC140Q96MF4 SNORA3.2-201ENST00000408221 125 ntBASIC1.71□□□□□ -2.14
CCDC140Q96MF4 RNA5SP425-201ENST00000410336 112 ntBASIC1.71□□□□□ -2.14
CCDC140Q96MF4 Z98742.3-201ENST00000418637 326 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 137.8 ms