Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AL020996.3-201ENST00000606617 222 ntBASIC1.43□□□□□ -2.18
HPS3Q969F9 MIR8055-201ENST00000610739 97 ntBASIC1.43□□□□□ -2.18
HPS3Q969F9 SEPT14P17-201ENST00000617978 177 ntBASIC1.43□□□□□ -2.18
HPS3Q969F9 MIR26B-201ENST00000362251 77 ntBASIC1.42□□□□□ -2.18
HPS3Q969F9 Y_RNA.330-201ENST00000365230 109 ntBASIC1.42□□□□□ -2.18
HPS3Q969F9 SNORD38B-201ENST00000384690 67 ntBASIC1.42□□□□□ -2.18
HPS3Q969F9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
HPS3Q969F9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.42□□□□□ -2.18
HPS3Q969F9 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.42□□□□□ -2.18
HPS3Q969F9 AP000753.3-201ENST00000604083 169 ntBASIC1.42□□□□□ -2.18
HPS3Q969F9 SNORD38B-202ENST00000625943 69 ntBASIC1.42□□□□□ -2.18
HPS3Q969F9 Z97988.1-201ENST00000637697 135 ntBASIC1.42□□□□□ -2.18
HPS3Q969F9 Y_RNA.120-201ENST00000363304 110 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 Y_RNA.170-201ENST00000363746 110 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 Y_RNA.215-201ENST00000364204 112 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 Y_RNA.354-201ENST00000365448 111 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 RNU6-939P-201ENST00000384634 107 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 MIR489-201ENST00000384923 84 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 MIR1302-7-201ENST00000408841 72 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 RNU7-90P-201ENST00000459216 62 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 MTND5P41-201ENST00000517498 206 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 AL078603.1-201ENST00000603824 313 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 AC091895.1-201ENST00000624494 256 ntBASIC1.41□□□□□ -2.18
HPS3Q969F9 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.18
HPS3Q969F9 Y_RNA.251-201ENST00000364551 99 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 Y_RNA.363-201ENST00000365529 113 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 RNU6-42P-201ENST00000384165 107 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 Y_RNA.466-201ENST00000384294 113 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 SNORA75.2-201ENST00000391138 150 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 SNORA40.6-201ENST00000391153 128 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 SNORA75.3-201ENST00000391231 150 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 RPS3AP1-201ENST00000413190 320 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 RNU6-893P-201ENST00000458841 100 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 RNU7-21P-201ENST00000459430 62 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 SNORA25.12-201ENST00000516202 82 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 MIR4452-201ENST00000583004 71 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 MIR3660-201ENST00000584845 100 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 MIR6516-201ENST00000630554 81 ntBASIC1.4□□□□□ -2.19
HPS3Q969F9 RNY1P6-201ENST00000384193 109 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 Y_RNA.488-201ENST00000384403 102 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 MT-TN-201ENST00000387400 73 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 RNU6-1319P-201ENST00000390855 104 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 RNU6-747P-201ENST00000390928 104 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 RNU6-241P-201ENST00000391148 104 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 RNU6-177P-201ENST00000411257 104 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.39□□□□□ -2.19
HPS3Q969F9 RNU7-200P-201ENST00000516105 62 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 RNA5SP236-201ENST00000516169 116 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 RNA5SP220-201ENST00000516298 104 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 AC011603.4-201ENST00000611325 277 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 MIR6717-201ENST00000622747 73 ntBASIC1.39□□□□□ -2.19
HPS3Q969F9 MIR618-201ENST00000385287 98 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 RNU6-613P-201ENST00000410412 108 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 AC063976.4-201ENST00000421971 163 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 HMGN1P33-201ENST00000432945 451 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 RNA5SP102-201ENST00000516865 106 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 RNU6-255P-201ENST00000516957 105 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 MIR4264-201ENST00000583520 66 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 SNORA4-201ENST00000584302 138 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 AC021613.1-201ENST00000623880 111 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 AC008163.1-202ENST00000636004 2889 ntBASIC1.38□□□□□ -2.19
HPS3Q969F9 Y_RNA.343-201ENST00000365354 112 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 RNU6-1062P-201ENST00000383908 107 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 AL603914.1-201ENST00000401964 204 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 RNU7-197P-201ENST00000458836 62 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 RNU7-45P-201ENST00000459460 63 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 RNU7-40P-201ENST00000516397 64 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 Y_RNA.690-201ENST00000516603 95 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 AC027335.2-201ENST00000624030 375 ntBASIC1.37□□□□□ -2.19
HPS3Q969F9 RNY1P5-201ENST00000383890 115 ntBASIC1.36□□□□□ -2.19
HPS3Q969F9 RNU6-125P-201ENST00000384505 107 ntBASIC1.36□□□□□ -2.19
HPS3Q969F9 RNU6-1190P-201ENST00000410811 104 ntBASIC1.36□□□□□ -2.19
HPS3Q969F9 RNU6-113P-201ENST00000516653 101 ntBASIC1.36□□□□□ -2.19
HPS3Q969F9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.36□□□□□ -2.19
HPS3Q969F9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.36□□□□□ -2.19
HPS3Q969F9 RNU6-690P-201ENST00000365242 106 ntBASIC1.35□□□□□ -2.19
HPS3Q969F9 Y_RNA.430-201ENST00000384081 110 ntBASIC1.35□□□□□ -2.19
HPS3Q969F9 RNU6-460P-201ENST00000391158 108 ntBASIC1.35□□□□□ -2.19
HPS3Q969F9 SNORA26.6-201ENST00000391256 115 ntBASIC1.35□□□□□ -2.19
HPS3Q969F9 RNU6-602P-201ENST00000411155 105 ntBASIC1.35□□□□□ -2.19
HPS3Q969F9 AC090844.1-201ENST00000422019 156 ntBASIC1.35□□□□□ -2.19
HPS3Q969F9 RNU2-60P-201ENST00000517290 128 ntBASIC1.35□□□□□ -2.19
HPS3Q969F9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
HPS3Q969F9 MIR377-201ENST00000362145 69 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 RNY1P11-201ENST00000363759 113 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 RNU6-654P-201ENST00000364373 107 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 SNORD113.3-201ENST00000364630 78 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 RNU6-915P-201ENST00000364943 103 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 SNORA2B-201ENST00000384583 137 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 AC002429.1-201ENST00000437672 148 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 Y_RNA.686-201ENST00000516548 134 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 Y_RNA.692-201ENST00000516627 105 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 AP001328.1-201ENST00000528550 176 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 MIR6734-201ENST00000621166 68 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 AP001340.1-201ENST00000624405 217 ntBASIC1.34□□□□□ -2.19
HPS3Q969F9 RNU6-349P-201ENST00000362402 107 ntBASIC1.33□□□□□ -2.2
HPS3Q969F9 RNU4-16P-201ENST00000364737 141 ntBASIC1.33□□□□□ -2.2
HPS3Q969F9 MIR569-201ENST00000385228 96 ntBASIC1.33□□□□□ -2.2
HPS3Q969F9 SNORD111-201ENST00000408139 94 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 269.7 ms