Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL158147.1-201ENST00000443970 75 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 RNU1-92P-201ENST00000517017 135 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 MIR8065-201ENST00000620577 100 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 MIR6717-201ENST00000622747 73 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-508P-201ENST00000363231 103 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 AL354695.1-201ENST00000427935 228 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 AC245047.7-201ENST00000440265 293 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 SNORA31.24-201ENST00000517232 57 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 SNORA1.1-201ENST00000364671 133 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-690P-201ENST00000365242 106 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 Y_RNA.354-201ENST00000365448 111 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 MIR1302-7-201ENST00000408841 72 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-321P-201ENST00000410912 106 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 RPS3AP1-201ENST00000413190 320 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 AC133485.4-201ENST00000561835 220 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 AC138907.4-201ENST00000570107 226 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 MIR4781-201ENST00000585250 76 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 SNORD113-1-201ENST00000365321 69 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-80P-201ENST00000384195 107 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-959P-201ENST00000384671 107 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 AL359821.1-201ENST00000605519 182 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 ZNF209P-201ENST00000593450 2304 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-396P-201ENST00000365369 105 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 SNORD38B-201ENST00000384690 67 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MT-TN-201ENST00000387400 73 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MIR1185-1-201ENST00000408598 86 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.617-201ENST00000410920 90 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-1211P-201ENST00000459179 105 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 AC048334.1-201ENST00000477975 159 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-240P-201ENST00000516098 97 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MIR2115-201ENST00000516657 100 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-971P-201ENST00000516920 106 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 AL137067.1-201ENST00000615933 120 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 SNORD38B-202ENST00000625943 69 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MIR6841-201ENST00000637129 72 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 AL161722.3-201ENST00000605789 2983 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 MIR103A2-201ENST00000362154 78 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 SNORA25.3-201ENST00000363205 127 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 SNORA7.1-201ENST00000363750 139 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNA5SP144-201ENST00000410846 116 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNU7-45P-201ENST00000459460 63 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 TRMT112P2-201ENST00000512910 132 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNU5E-3P-201ENST00000515913 68 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RN7SKP19-201ENST00000516016 252 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 SNORA31.2-201ENST00000516019 134 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNA5SP61-201ENST00000516453 100 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 MIR4421-201ENST00000578133 69 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 MIR4305-201ENST00000583252 102 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 HSPE1P19-201ENST00000603327 295 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.294-201ENST00000364916 102 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-1190P-201ENST00000410811 104 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 POLR2J4-204ENST00000418424 324 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 AC108081.1-201ENST00000604358 221 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 SNORA22.1-201ENST00000362701 134 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.366-201ENST00000365540 102 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-602P-201ENST00000411155 105 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 AL022718.1-201ENST00000412004 84 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 RN7SKP179-201ENST00000516126 217 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 AC021443.1-201ENST00000604478 211 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 AL157834.3-201ENST00000615543 103 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 SNORD115-2-201ENST00000362842 82 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.71-201ENST00000362892 104 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 SNORD115-20-201ENST00000365099 82 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-1117P-201ENST00000384525 104 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-613P-201ENST00000410412 108 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNA5SP136-201ENST00000410906 107 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 HMGN1P33-201ENST00000432945 451 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 MIR4264-201ENST00000583520 66 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 MIR7974-201ENST00000615835 79 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 SEPT14P17-201ENST00000617978 177 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 MIR6516-201ENST00000630554 81 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNU4-16P-201ENST00000364737 141 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.327-201ENST00000365201 102 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 SNORD26-201ENST00000384147 75 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 SNORA80D-201ENST00000384488 135 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 SNORD12-201ENST00000391002 90 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 AC090844.1-201ENST00000422019 156 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 RPS29P23-201ENST00000458635 123 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 RNU7-164P-201ENST00000459221 62 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
PTCHD3Q3KNS1 MIR377-201ENST00000362145 69 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 MIR337-201ENST00000362281 93 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 Y_RNA.218-201ENST00000364218 104 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 Y_RNA.298-201ENST00000364960 107 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 AL591704.2-201ENST00000421658 181 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms