Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNY1P11-201ENST00000363759 113 ntBASIC1.65□□□□□ -2.15
SF3A1Q15459 RNY1P6-201ENST00000384193 109 ntBASIC1.65□□□□□ -2.15
SF3A1Q15459 Y_RNA.508-201ENST00000384502 114 ntBASIC1.65□□□□□ -2.15
SF3A1Q15459 RPS3AP1-201ENST00000413190 320 ntBASIC1.65□□□□□ -2.15
SF3A1Q15459 AC002429.1-201ENST00000437672 148 ntBASIC1.65□□□□□ -2.15
SF3A1Q15459 RNA5SP61-201ENST00000516453 100 ntBASIC1.65□□□□□ -2.15
SF3A1Q15459 MIR3152-201ENST00000579801 74 ntBASIC1.65□□□□□ -2.15
SF3A1Q15459 U8.1-201ENST00000362843 134 ntBASIC1.64□□□□□ -2.15
SF3A1Q15459 MIR548I1-201ENST00000408810 149 ntBASIC1.64□□□□□ -2.15
SF3A1Q15459 MIR6717-201ENST00000622747 73 ntBASIC1.64□□□□□ -2.15
SF3A1Q15459 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SF3A1Q15459 Y_RNA.400-201ENST00000383963 111 ntBASIC1.63□□□□□ -2.15
SF3A1Q15459 RNU5E-3P-201ENST00000515913 68 ntBASIC1.63□□□□□ -2.15
SF3A1Q15459 RNA5SP236-201ENST00000516169 116 ntBASIC1.63□□□□□ -2.15
SF3A1Q15459 MIR4264-201ENST00000583520 66 ntBASIC1.63□□□□□ -2.15
SF3A1Q15459 HSPE1P19-201ENST00000603327 295 ntBASIC1.63□□□□□ -2.15
SF3A1Q15459 AC021613.1-201ENST00000623880 111 ntBASIC1.63□□□□□ -2.15
SF3A1Q15459 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.63□□□□□ -2.15
SF3A1Q15459 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SF3A1Q15459 Y_RNA.355-201ENST00000365462 98 ntBASIC1.62□□□□□ -2.15
SF3A1Q15459 MT-TN-201ENST00000387400 73 ntBASIC1.62□□□□□ -2.15
SF3A1Q15459 RNU6-602P-201ENST00000411155 105 ntBASIC1.62□□□□□ -2.15
SF3A1Q15459 RNA5SP404-201ENST00000517118 132 ntBASIC1.62□□□□□ -2.15
SF3A1Q15459 MIR548X2-201ENST00000579776 100 ntBASIC1.62□□□□□ -2.15
SF3A1Q15459 Y_RNA.170-201ENST00000363746 110 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 RNU6-690P-201ENST00000365242 106 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 MIR150-201ENST00000385048 84 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 RNU6-1319P-201ENST00000390855 104 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 RNU6-747P-201ENST00000390928 104 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 RNU6-241P-201ENST00000391148 104 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 RNU6-460P-201ENST00000391158 108 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 SNORA26.6-201ENST00000391256 115 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 RNU6-994P-201ENST00000410507 111 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 RNU6-177P-201ENST00000411257 104 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.61□□□□□ -2.15
SF3A1Q15459 Y_RNA.690-201ENST00000516603 95 ntBASIC1.61□□□□□ -2.15
SF3A1Q15459 Y_RNA.215-201ENST00000364204 112 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 Y_RNA.327-201ENST00000365201 102 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 Y_RNA.354-201ENST00000365448 111 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 MIR618-201ENST00000385287 98 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 Y_RNA.686-201ENST00000516548 134 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 RNU2-60P-201ENST00000517290 128 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.6□□□□□ -2.15
SF3A1Q15459 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.6□□□□□ -2.15
SF3A1Q15459 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SF3A1Q15459 Y_RNA.120-201ENST00000363304 110 ntBASIC1.59□□□□□ -2.15
SF3A1Q15459 Y_RNA.251-201ENST00000364551 99 ntBASIC1.59□□□□□ -2.15
SF3A1Q15459 SNORD113.3-201ENST00000364630 78 ntBASIC1.59□□□□□ -2.15
SF3A1Q15459 RNU7-62P-201ENST00000458856 62 ntBASIC1.59□□□□□ -2.15
SF3A1Q15459 RNU6-1212P-201ENST00000517023 104 ntBASIC1.59□□□□□ -2.15
SF3A1Q15459 AC036111.3-201ENST00000526389 112 ntBASIC1.59□□□□□ -2.15
SF3A1Q15459 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.59□□□□□ -2.15
SF3A1Q15459 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.59□□□□□ -2.15
SF3A1Q15459 MIR377-201ENST00000362145 69 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 SNORA22.1-201ENST00000362701 134 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 Y_RNA.488-201ENST00000384403 102 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 MIR19B1-201ENST00000384829 87 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.58□□□□□ -2.16
SF3A1Q15459 RNU6-255P-201ENST00000516957 105 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 RNU1-92P-201ENST00000517017 135 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 RNU6-94P-201ENST00000607728 107 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 AC106800.4-201ENST00000614905 153 ntBASIC1.58□□□□□ -2.16
SF3A1Q15459 Y_RNA.116-201ENST00000363292 103 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 Y_RNA.168-201ENST00000363740 102 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 RNU6-915P-201ENST00000364943 103 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 RNU6-939P-201ENST00000384634 107 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 MIR518E-201ENST00000385252 88 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 SNORD111-201ENST00000408139 94 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 AC244023.1-201ENST00000426884 112 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 RNU7-197P-201ENST00000458836 62 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 RNU7-200P-201ENST00000516105 62 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 AC242498.1-201ENST00000604134 111 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 MIR7974-201ENST00000615835 79 ntBASIC1.57□□□□□ -2.16
SF3A1Q15459 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SF3A1Q15459 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SF3A1Q15459 RNU6-240P-201ENST00000516098 97 ntBASIC1.56□□□□□ -2.16
SF3A1Q15459 AC011603.4-201ENST00000611325 277 ntBASIC1.56□□□□□ -2.16
SF3A1Q15459 RNU6-349P-201ENST00000362402 107 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 SNORA7.1-201ENST00000363750 139 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 Y_RNA.224-201ENST00000364308 111 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 Y_RNA.420-201ENST00000384043 110 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 Y_RNA.430-201ENST00000384081 110 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 SNORD12C-201ENST00000386307 89 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 MIR942-201ENST00000401111 86 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 AC067940.1-201ENST00000458411 300 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 RNU6-893P-201ENST00000458841 100 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 SNORD124-201ENST00000459577 104 ntBASIC1.55□□□□□ -2.16
SF3A1Q15459 RNU1-124P-201ENST00000363861 145 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 RNU6-309P-201ENST00000364573 106 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 MIR569-201ENST00000385228 96 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 MIR758-201ENST00000390227 88 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 AL603914.1-201ENST00000401964 204 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 AP001328.1-201ENST00000528550 176 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 AC068338.1-201ENST00000565567 176 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 ZNF209P-201ENST00000593450 2304 ntBASIC1.54□□□□□ -2.16
SF3A1Q15459 RNU6-508P-201ENST00000363231 103 ntBASIC1.53□□□□□ -2.16
SF3A1Q15459 RNU6-392P-201ENST00000364926 101 ntBASIC1.53□□□□□ -2.16
SF3A1Q15459 RNU6-1062P-201ENST00000383908 107 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms