Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNRPGP14-201ENST00000435400 219 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 HMGN2P34-201ENST00000437647 269 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 RNU6-830P-201ENST00000516353 107 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 MIR3973-201ENST00000579824 107 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 AL591926.4-201ENST00000616895 298 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 MIR2909-201ENST00000617113 69 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
COL4A4P53420 SNORD68-201ENST00000363214 84 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU1-23P-201ENST00000363361 144 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-268P-201ENST00000364174 107 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNA5SP173-201ENST00000364857 136 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 snoU2-30.1-201ENST00000365012 70 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-1189P-201ENST00000383958 107 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-160P-201ENST00000384591 107 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-1104P-201ENST00000384723 104 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 MIR532-201ENST00000385025 91 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 SNORA26.2-201ENST00000390922 122 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 MTATP6P21-201ENST00000440681 189 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.07□□□□□ -2.24
COL4A4P53420 CYP2C59P-201ENST00000457790 269 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-1041P-201ENST00000516254 102 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-1099P-201ENST00000363533 107 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 Y_RNA.323-201ENST00000365157 109 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-756P-201ENST00000383997 107 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 SNORA51.5-201ENST00000384126 131 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-49P-201ENST00000384256 107 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 SNORA8-201ENST00000384574 139 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 MIR218-1-201ENST00000384999 110 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 SNORD12C-201ENST00000386307 89 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNU6-220P-201ENST00000390919 107 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RNA5SP482-201ENST00000391269 118 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 AL356379.1-201ENST00000414105 126 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 MTATP8P2-201ENST00000435212 202 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 RPS29P28-201ENST00000446439 141 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 HSPE1P24-201ENST00000450782 238 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 AC024995.1-201ENST00000523014 93 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 AC068339.1-201ENST00000526965 141 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 MIR4778-201ENST00000577635 80 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 MIR5009-201ENST00000578736 100 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.07□□□□□ -2.24
COL4A4P53420 SNORD114-21-201ENST00000606412 72 ntBASIC1.07□□□□□ -2.24
COL4A4P53420 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
COL4A4P53420 AL596211.1-201ENST00000569873 2277 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
COL4A4P53420 RNA5SP493-201ENST00000364115 91 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 SNORA63D-201ENST00000364359 132 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 Y_RNA.336-201ENST00000365307 109 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 Y_RNA.344-201ENST00000365381 112 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 RNY1P6-201ENST00000384193 109 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 RNU6-820P-201ENST00000384273 107 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 Y_RNA.494-201ENST00000384432 111 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 MIR1262-201ENST00000408276 93 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 AL606517.2-201ENST00000442855 241 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 RPL39P25-201ENST00000449384 154 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.06□□□□□ -2.24
COL4A4P53420 SUMO2P16-201ENST00000519475 264 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 AP002004.2-201ENST00000531656 154 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 AC022217.4-201ENST00000604389 163 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 AC021443.1-201ENST00000604478 211 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.06□□□□□ -2.24
COL4A4P53420 RNU6-766P-201ENST00000362478 107 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 Y_RNA.78-201ENST00000362970 110 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 RNU6-690P-201ENST00000365242 106 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 SNORA4.2-201ENST00000365313 147 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 RNU6-880P-201ENST00000384526 107 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 MIR1302-5-201ENST00000408164 150 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 RNY4P29-201ENST00000410801 97 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 Y_RNA.621-201ENST00000411065 96 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.05□□□□□ -2.24
COL4A4P53420 RNU7-80P-201ENST00000459562 61 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 RNU7-123P-201ENST00000515911 60 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 RNU6-1018P-201ENST00000516577 106 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 RNU7-70P-201ENST00000516941 66 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 RNU7-128P-201ENST00000517247 62 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 MIR4698-201ENST00000577795 80 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 AC078899.2-201ENST00000595282 212 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 AL442128.1-201ENST00000615151 90 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 AC027279.3-201ENST00000625055 122 ntBASIC1.05□□□□□ -2.24
COL4A4P53420 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
COL4A4P53420 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.04□□□□□ -2.24
COL4A4P53420 MIR126-201ENST00000362291 85 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-833P-201ENST00000363486 107 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-640P-201ENST00000363693 105 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-1131P-201ENST00000364955 107 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.299-201ENST00000364973 94 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.362-201ENST00000365518 110 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.370-201ENST00000365589 108 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-573P-201ENST00000383938 106 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 SNORD38C-201ENST00000384381 69 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.547-201ENST00000384654 119 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-1319P-201ENST00000390855 104 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-747P-201ENST00000390928 104 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNA5SP323-201ENST00000391094 133 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-241P-201ENST00000391148 104 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 MIR936-201ENST00000401264 98 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 MIR1912-201ENST00000410389 80 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.601-201ENST00000410500 113 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-177P-201ENST00000411257 104 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-592P-201ENST00000411333 103 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms