Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL035398.1-201ENST00000430869 322 ntBASIC1.02□□□□□ -2.25
HNF4AP41235 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.02□□□□□ -2.25
HNF4AP41235 RNU2-11P-201ENST00000459191 187 ntBASIC1.02□□□□□ -2.25
HNF4AP41235 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.02□□□□□ -2.25
HNF4AP41235 RNA5SP272-201ENST00000516095 111 ntBASIC1.02□□□□□ -2.25
HNF4AP41235 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.02□□□□□ -2.25
HNF4AP41235 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.02□□□□□ -2.25
HNF4AP41235 SNORD114-21-201ENST00000606412 72 ntBASIC1.02□□□□□ -2.25
HNF4AP41235 MIR1185-1-201ENST00000408598 86 ntBASIC1.01□□□□□ -2.25
HNF4AP41235 RNU7-73P-201ENST00000458743 63 ntBASIC1.01□□□□□ -2.25
HNF4AP41235 RNU7-96P-201ENST00000459535 64 ntBASIC1.01□□□□□ -2.25
HNF4AP41235 RNA5SP236-201ENST00000516169 116 ntBASIC1.01□□□□□ -2.25
HNF4AP41235 AL020996.3-201ENST00000606617 222 ntBASIC1.01□□□□□ -2.25
HNF4AP41235 AC091932.4-201ENST00000623386 200 ntBASIC1.01□□□□□ -2.25
HNF4AP41235 AL596211.1-201ENST00000569873 2277 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNA5SP264-201ENST00000363115 107 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU6-774P-201ENST00000363238 107 ntBASIC1□□□□□ -2.25
HNF4AP41235 SNORD114-27-201ENST00000363766 70 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU6-392P-201ENST00000364926 101 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU1-36P-201ENST00000365130 165 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU6-125P-201ENST00000384505 107 ntBASIC1□□□□□ -2.25
HNF4AP41235 MIR569-201ENST00000385228 96 ntBASIC1□□□□□ -2.25
HNF4AP41235 Y_RNA.584-201ENST00000391090 114 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU6-460P-201ENST00000391158 108 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU6-1190P-201ENST00000410811 104 ntBASIC1□□□□□ -2.25
HNF4AP41235 AC090844.1-201ENST00000422019 156 ntBASIC1□□□□□ -2.25
HNF4AP41235 snoU13.16-201ENST00000459350 104 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU7-45P-201ENST00000459460 63 ntBASIC1□□□□□ -2.25
HNF4AP41235 RNU7-80P-201ENST00000459562 61 ntBASIC1□□□□□ -2.25
HNF4AP41235 SNORD124-201ENST00000459577 104 ntBASIC1□□□□□ -2.25
HNF4AP41235 PDCD5P2-201ENST00000507570 312 ntBASIC1□□□□□ -2.25
HNF4AP41235 SNORA25.12-201ENST00000516202 82 ntBASIC1□□□□□ -2.25
HNF4AP41235 Y_RNA.686-201ENST00000516548 134 ntBASIC1□□□□□ -2.25
HNF4AP41235 MIR548X2-201ENST00000579776 100 ntBASIC1□□□□□ -2.25
HNF4AP41235 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
HNF4AP41235 MIR8055-201ENST00000610739 97 ntBASIC1□□□□□ -2.25
HNF4AP41235 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.99□□□□□ -2.25
HNF4AP41235 RNA5SP48-201ENST00000363969 126 ntBASIC0.99□□□□□ -2.25
HNF4AP41235 RNU6-309P-201ENST00000364573 106 ntBASIC0.99□□□□□ -2.25
HNF4AP41235 SNORA20-201ENST00000384662 132 ntBASIC0.99□□□□□ -2.25
HNF4AP41235 HMGN1P33-201ENST00000432945 451 ntBASIC0.99□□□□□ -2.25
HNF4AP41235 AL392103.1-201ENST00000447000 198 ntBASIC0.99□□□□□ -2.25
HNF4AP41235 RNY1P5-201ENST00000383890 115 ntBASIC0.98□□□□□ -2.25
HNF4AP41235 MIR513C-201ENST00000401352 84 ntBASIC0.98□□□□□ -2.25
HNF4AP41235 RNU6-426P-201ENST00000516464 97 ntBASIC0.98□□□□□ -2.25
HNF4AP41235 RNU7-53P-201ENST00000516705 60 ntBASIC0.98□□□□□ -2.25
HNF4AP41235 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.98□□□□□ -2.25
HNF4AP41235 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
HNF4AP41235 AC008163.1-202ENST00000636004 2889 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 MIR103A2-201ENST00000362154 78 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 MIR302B-201ENST00000362188 73 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 RNU1-133P-201ENST00000364867 167 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 Y_RNA.454-201ENST00000384224 113 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 Y_RNA.488-201ENST00000384403 102 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 SNORA75.2-201ENST00000391138 150 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 SNORA75.3-201ENST00000391231 150 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 SNORA26.6-201ENST00000391256 115 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 MIR3133-201ENST00000583157 78 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 MIR6516-201ENST00000630554 81 ntBASIC0.97□□□□□ -2.25
HNF4AP41235 RNU6-349P-201ENST00000362402 107 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 Y_RNA.120-201ENST00000363304 110 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 Y_RNA.164-201ENST00000363709 102 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 RNU4-38P-201ENST00000364472 129 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 MIR942-201ENST00000401111 86 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 AC244023.1-201ENST00000426884 112 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 Y_RNA.651-201ENST00000459380 103 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 RNU7-70P-201ENST00000516941 66 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 MIR4781-201ENST00000585250 76 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 AC242498.1-201ENST00000604134 111 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 MIR6717-201ENST00000622747 73 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 Z97988.1-201ENST00000637697 135 ntBASIC0.96□□□□□ -2.26
HNF4AP41235 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
HNF4AP41235 RNU6-654P-201ENST00000364373 107 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 Y_RNA.420-201ENST00000384043 110 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU6-746P-201ENST00000384112 109 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU6-187P-201ENST00000384139 106 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU6-1319P-201ENST00000390855 104 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU6-747P-201ENST00000390928 104 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU6-241P-201ENST00000391148 104 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 AL603914.1-201ENST00000401964 204 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU6-177P-201ENST00000411257 104 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU7-90P-201ENST00000459216 62 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RNU7-21P-201ENST00000459430 62 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 Y_RNA.690-201ENST00000516603 95 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.95□□□□□ -2.26
HNF4AP41235 MIR3121-201ENST00000579680 77 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.95□□□□□ -2.26
HNF4AP41235 AC211469.2-201ENST00000605461 205 ntBASIC0.95□□□□□ -2.26
HNF4AP41235 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
HNF4AP41235 RNU4-16P-201ENST00000364737 141 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 RNU6-915P-201ENST00000364943 103 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 SNORD18B-201ENST00000365659 72 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 Y_RNA.568-201ENST00000384742 113 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 RNU6-602P-201ENST00000411155 105 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 ACA64.5-201ENST00000516207 127 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 Y_RNA.703-201ENST00000516846 111 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 RNU11-2P-201ENST00000516898 142 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms