Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU4-70P-201ENST00000384579 139 ntBASIC-2.08□□□□□ -2.74
CUX1P39880 AC009961.2-201ENST00000435771 251 ntBASIC-2.08□□□□□ -2.74
CUX1P39880 SNORA40.9-201ENST00000515895 93 ntBASIC-2.08□□□□□ -2.74
CUX1P39880 RNU6-720P-201ENST00000516363 108 ntBASIC-2.08□□□□□ -2.74
CUX1P39880 SNORD115-27-201ENST00000364430 82 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 RNU5E-5P-201ENST00000365379 116 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 RNU6-571P-201ENST00000384128 107 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 RNU7-180P-201ENST00000459240 63 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 RNU6-1170P-201ENST00000515974 106 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 RNU6-980P-201ENST00000516925 103 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 AC007012.1-201ENST00000567192 175 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 MIR5583-1-201ENST00000580941 59 ntBASIC-2.09□□□□□ -2.74
CUX1P39880 Y_RNA.665-201ENST00000516177 98 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 SCARNA17.3-201ENST00000516381 125 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 RNU7-149P-201ENST00000516739 59 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 Y_RNA.706-201ENST00000516933 99 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 AC060788.1-201ENST00000521318 469 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 MIR3682-201ENST00000581338 84 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 AC009161.2-201ENST00000624626 138 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 MIR664B-201ENST00000626756 61 ntBASIC-2.1□□□□□ -2.75
CUX1P39880 SNORD113-7-201ENST00000363762 77 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 Y_RNA.366-201ENST00000365540 102 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 RNU4-20P-201ENST00000365601 151 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 RNU6-83P-201ENST00000384568 112 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 AL606923.1-201ENST00000406616 190 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 RNU7-187P-201ENST00000458985 68 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 AC097510.1-201ENST00000510945 133 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-2.11□□□□□ -2.75
CUX1P39880 RNU6-1192P-201ENST00000612197 107 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 RNU6-489P-201ENST00000618289 107 ntBASIC-2.11□□□□□ -2.75
CUX1P39880 Y_RNA.101-201ENST00000363154 102 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 Y_RNA.491-201ENST00000384417 107 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 MIR507-201ENST00000385234 94 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-2.12□□□□□ -2.75
CUX1P39880 RNU6-408P-201ENST00000515910 100 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 ACA59.1-201ENST00000515966 143 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 MIR4500-201ENST00000579472 76 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 RNU6-879P-201ENST00000364328 108 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 SNORA62.4-201ENST00000365504 151 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-2.12□□□□□ -2.75
CUX1P39880 MIR4308-201ENST00000580634 81 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 AL080274.1-201ENST00000605565 220 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 AL008718.3-201ENST00000610217 321 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-2.12□□□□□ -2.75
CUX1P39880 RNU6-595P-201ENST00000363944 107 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 Y_RNA.212-201ENST00000364177 102 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 Y_RNA.215-201ENST00000364204 112 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 RNY4P34-201ENST00000364779 95 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 MIR548A2-201ENST00000384956 97 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 MIR548I2-201ENST00000408348 149 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 CCDC34P1-201ENST00000507441 517 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-2.13□□□□□ -2.75
CUX1P39880 Y_RNA.809-201ENST00000516058 95 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 RNU7-35P-201ENST00000517174 62 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 MIR3139-201ENST00000579145 76 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 UBE2V2P2-201ENST00000587677 504 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 AC006927.3-201ENST00000638789 384 ntBASIC-2.13□□□□□ -2.75
CUX1P39880 RNU6-1260P-201ENST00000362944 107 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 SNORD115-33-201ENST00000363723 82 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 Y_RNA.557-201ENST00000384680 107 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 MIR519A1-201ENST00000385257 85 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-2.14□□□□□ -2.75
CUX1P39880 MIR2113-201ENST00000459007 91 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 UBE2V1P12-201ENST00000503954 474 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 RNU6-1258P-201ENST00000516911 111 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 AC018638.8-201ENST00000588755 281 ntBASIC-2.14□□□□□ -2.75
CUX1P39880 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 RNU4-80P-201ENST00000363200 141 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 Y_RNA.432-201ENST00000384087 111 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 Y_RNA.440-201ENST00000384120 114 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 Y_RNA.446-201ENST00000384178 104 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 RNU6-524P-201ENST00000384270 107 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 RNY3P4-201ENST00000384428 101 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 AL356010.1-201ENST00000456364 102 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 RNU6-893P-201ENST00000458841 100 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 RNU6-470P-201ENST00000515954 104 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 MIR4424-201ENST00000585257 86 ntBASIC-2.15□□□□□ -2.75
CUX1P39880 SNORD115-23-201ENST00000364461 82 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 SNORA26.4-201ENST00000391188 123 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 SNORA36B-201ENST00000410438 131 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 MTATP6P13-201ENST00000438531 667 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 RNU7-195P-201ENST00000458793 62 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 RNU7-80P-201ENST00000459562 61 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 RNU2-31P-201ENST00000516954 155 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.16□□□□□ -2.75
CUX1P39880 DLEU2_5.2-201ENST00000610606 84 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 DLEU2_5.1-201ENST00000615567 84 ntBASIC-2.16□□□□□ -2.75
CUX1P39880 RNU6-1189P-201ENST00000383958 107 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 RNU6-1200P-201ENST00000384162 107 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 RNU6-1208P-201ENST00000459588 107 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 SNORA19.3-201ENST00000516165 130 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 MIR4273-201ENST00000582824 84 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 MIR4999-201ENST00000585029 91 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 Y_RNA.27-201ENST00000362540 103 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 RNU6-318P-201ENST00000384283 103 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 Y_RNA.486-201ENST00000384398 107 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 SNORA20-201ENST00000384662 132 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 SNORD75.2-201ENST00000408784 58 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 RNU6-195P-201ENST00000411352 109 ntBASIC-2.17□□□□□ -2.76
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms