Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HSPE1P19-201ENST00000603327 295 ntBASIC1.03□□□□□ -2.24
MSH3P20585 SNORD114-21-201ENST00000606412 72 ntBASIC1.03□□□□□ -2.24
MSH3P20585 SEPT14P17-201ENST00000617978 177 ntBASIC1.03□□□□□ -2.24
MSH3P20585 RNU1-133P-201ENST00000364867 167 ntBASIC1.02□□□□□ -2.25
MSH3P20585 RNU6-396P-201ENST00000365369 105 ntBASIC1.02□□□□□ -2.25
MSH3P20585 Y_RNA.584-201ENST00000391090 114 ntBASIC1.02□□□□□ -2.25
MSH3P20585 RNU6-1190P-201ENST00000410811 104 ntBASIC1.02□□□□□ -2.25
MSH3P20585 RNU7-197P-201ENST00000458836 62 ntBASIC1.02□□□□□ -2.25
MSH3P20585 MIR2115-201ENST00000516657 100 ntBASIC1.02□□□□□ -2.25
MSH3P20585 RNU7-70P-201ENST00000516941 66 ntBASIC1.02□□□□□ -2.25
MSH3P20585 RNU2-60P-201ENST00000517290 128 ntBASIC1.02□□□□□ -2.25
MSH3P20585 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.02□□□□□ -2.25
MSH3P20585 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
MSH3P20585 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.02□□□□□ -2.25
MSH3P20585 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
MSH3P20585 Y_RNA.400-201ENST00000383963 111 ntBASIC1.01□□□□□ -2.25
MSH3P20585 RNU6-125P-201ENST00000384505 107 ntBASIC1.01□□□□□ -2.25
MSH3P20585 SNORA26.6-201ENST00000391256 115 ntBASIC1.01□□□□□ -2.25
MSH3P20585 HMGN1P33-201ENST00000432945 451 ntBASIC1.01□□□□□ -2.25
MSH3P20585 AC002429.1-201ENST00000437672 148 ntBASIC1.01□□□□□ -2.25
MSH3P20585 RNU7-45P-201ENST00000459460 63 ntBASIC1.01□□□□□ -2.25
MSH3P20585 RPS23P4-201ENST00000487908 423 ntBASIC1.01□□□□□ -2.25
MSH3P20585 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.01□□□□□ -2.25
MSH3P20585 MIR4781-201ENST00000585250 76 ntBASIC1.01□□□□□ -2.25
MSH3P20585 MIR6717-201ENST00000622747 73 ntBASIC1.01□□□□□ -2.25
MSH3P20585 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
MSH3P20585 Y_RNA.170-201ENST00000363746 110 ntBASIC1□□□□□ -2.25
MSH3P20585 RNU1-124P-201ENST00000363861 145 ntBASIC1□□□□□ -2.25
MSH3P20585 RNU6-654P-201ENST00000364373 107 ntBASIC1□□□□□ -2.25
MSH3P20585 SNORA1.1-201ENST00000364671 133 ntBASIC1□□□□□ -2.25
MSH3P20585 MIR222-201ENST00000384992 110 ntBASIC1□□□□□ -2.25
MSH3P20585 RNU6-1319P-201ENST00000390855 104 ntBASIC1□□□□□ -2.25
MSH3P20585 RNU6-747P-201ENST00000390928 104 ntBASIC1□□□□□ -2.25
MSH3P20585 RNU6-241P-201ENST00000391148 104 ntBASIC1□□□□□ -2.25
MSH3P20585 RNU6-613P-201ENST00000410412 108 ntBASIC1□□□□□ -2.25
MSH3P20585 RNU6-177P-201ENST00000411257 104 ntBASIC1□□□□□ -2.25
MSH3P20585 AC244023.1-201ENST00000426884 112 ntBASIC1□□□□□ -2.25
MSH3P20585 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1□□□□□ -2.25
MSH3P20585 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1□□□□□ -2.25
MSH3P20585 RNU7-200P-201ENST00000516105 62 ntBASIC1□□□□□ -2.25
MSH3P20585 MIR548X2-201ENST00000579776 100 ntBASIC1□□□□□ -2.25
MSH3P20585 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1□□□□□ -2.25
MSH3P20585 AC242498.1-201ENST00000604134 111 ntBASIC1□□□□□ -2.25
MSH3P20585 AC008163.1-202ENST00000636004 2889 ntBASIC1□□□□□ -2.25
MSH3P20585 Y_RNA.120-201ENST00000363304 110 ntBASIC0.99□□□□□ -2.25
MSH3P20585 Y_RNA.215-201ENST00000364204 112 ntBASIC0.99□□□□□ -2.25
MSH3P20585 RNU4-38P-201ENST00000364472 129 ntBASIC0.99□□□□□ -2.25
MSH3P20585 Y_RNA.330-201ENST00000365230 109 ntBASIC0.99□□□□□ -2.25
MSH3P20585 MT-TN-201ENST00000387400 73 ntBASIC0.99□□□□□ -2.25
MSH3P20585 RNA5SP261-201ENST00000410536 106 ntBASIC0.99□□□□□ -2.25
MSH3P20585 AC063976.4-201ENST00000421971 163 ntBASIC0.99□□□□□ -2.25
MSH3P20585 RNU7-90P-201ENST00000459216 62 ntBASIC0.99□□□□□ -2.25
MSH3P20585 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.99□□□□□ -2.25
MSH3P20585 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
MSH3P20585 RNU6-349P-201ENST00000362402 107 ntBASIC0.98□□□□□ -2.25
MSH3P20585 Y_RNA.430-201ENST00000384081 110 ntBASIC0.98□□□□□ -2.25
MSH3P20585 SNORD38B-201ENST00000384690 67 ntBASIC0.98□□□□□ -2.25
MSH3P20585 MIR19B1-201ENST00000384829 87 ntBASIC0.98□□□□□ -2.25
MSH3P20585 MIR513C-201ENST00000401352 84 ntBASIC0.98□□□□□ -2.25
MSH3P20585 RNU6-602P-201ENST00000411155 105 ntBASIC0.98□□□□□ -2.25
MSH3P20585 MTATP6P21-201ENST00000440681 189 ntBASIC0.98□□□□□ -2.25
MSH3P20585 Y_RNA.686-201ENST00000516548 134 ntBASIC0.98□□□□□ -2.25
MSH3P20585 AC036111.3-201ENST00000526389 112 ntBASIC0.98□□□□□ -2.25
MSH3P20585 MIR3152-201ENST00000579801 74 ntBASIC0.98□□□□□ -2.25
MSH3P20585 AC021613.1-201ENST00000623880 111 ntBASIC0.98□□□□□ -2.25
MSH3P20585 SNORD38B-202ENST00000625943 69 ntBASIC0.98□□□□□ -2.25
MSH3P20585 AL391516.1-201ENST00000554380 2449 ntBASIC0.98□□□□□ -2.25
MSH3P20585 RNU6-580P-201ENST00000365159 107 ntBASIC0.97□□□□□ -2.25
MSH3P20585 SNORD18B-201ENST00000365659 72 ntBASIC0.97□□□□□ -2.25
MSH3P20585 RNY1P6-201ENST00000384193 109 ntBASIC0.97□□□□□ -2.25
MSH3P20585 Y_RNA.506-201ENST00000384494 102 ntBASIC0.97□□□□□ -2.25
MSH3P20585 MIR569-201ENST00000385228 96 ntBASIC0.97□□□□□ -2.25
MSH3P20585 RNU6-460P-201ENST00000391158 108 ntBASIC0.97□□□□□ -2.25
MSH3P20585 AL603914.1-201ENST00000401964 204 ntBASIC0.97□□□□□ -2.25
MSH3P20585 RPS3AP1-201ENST00000413190 320 ntBASIC0.97□□□□□ -2.25
MSH3P20585 SNORA25.12-201ENST00000516202 82 ntBASIC0.97□□□□□ -2.25
MSH3P20585 MIR4264-201ENST00000583520 66 ntBASIC0.97□□□□□ -2.25
MSH3P20585 AC012676.2-201ENST00000619258 186 ntBASIC0.97□□□□□ -2.25
MSH3P20585 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.97□□□□□ -2.25
MSH3P20585 MIR377-201ENST00000362145 69 ntBASIC0.96□□□□□ -2.26
MSH3P20585 Y_RNA.4-201ENST00000362333 112 ntBASIC0.96□□□□□ -2.26
MSH3P20585 Y_RNA.164-201ENST00000363709 102 ntBASIC0.96□□□□□ -2.26
MSH3P20585 SNORD114-27-201ENST00000363766 70 ntBASIC0.96□□□□□ -2.26
MSH3P20585 RNU6-309P-201ENST00000364573 106 ntBASIC0.96□□□□□ -2.26
MSH3P20585 SNORD113.3-201ENST00000364630 78 ntBASIC0.96□□□□□ -2.26
MSH3P20585 RNY1P5-201ENST00000383890 115 ntBASIC0.96□□□□□ -2.26
MSH3P20585 RNA5SP95-201ENST00000410319 137 ntBASIC0.96□□□□□ -2.26
MSH3P20585 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.96□□□□□ -2.26
MSH3P20585 Y_RNA.651-201ENST00000459380 103 ntBASIC0.96□□□□□ -2.26
MSH3P20585 Y_RNA.690-201ENST00000516603 95 ntBASIC0.96□□□□□ -2.26
MSH3P20585 AP000753.3-201ENST00000604083 169 ntBASIC0.96□□□□□ -2.26
MSH3P20585 AC106800.4-201ENST00000614905 153 ntBASIC0.96□□□□□ -2.26
MSH3P20585 MIR6841-201ENST00000637129 72 ntBASIC0.96□□□□□ -2.26
MSH3P20585 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.96□□□□□ -2.26
MSH3P20585 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.95□□□□□ -2.26
MSH3P20585 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
MSH3P20585 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
MSH3P20585 RNU6-508P-201ENST00000363231 103 ntBASIC0.95□□□□□ -2.26
MSH3P20585 Y_RNA.168-201ENST00000363740 102 ntBASIC0.95□□□□□ -2.26
MSH3P20585 Y_RNA.354-201ENST00000365448 111 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 173.2 ms