Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 RPS29P24-201ENST00000486345 171 ntBASIC0.56□□□□□ -2.32
MMP1P03956 Y_RNA.680-201ENST00000516441 93 ntBASIC0.56□□□□□ -2.32
MMP1P03956 RNU6-1110P-201ENST00000516462 101 ntBASIC0.56□□□□□ -2.32
MMP1P03956 AC243829.6-201ENST00000612652 106 ntBASIC0.56□□□□□ -2.32
MMP1P03956 Z97988.1-201ENST00000637697 135 ntBASIC0.56□□□□□ -2.32
MMP1P03956 AC099654.10-201ENST00000640395 161 ntBASIC0.56□□□□□ -2.32
MMP1P03956 Y_RNA.162-201ENST00000363683 102 ntBASIC0.55□□□□□ -2.32
MMP1P03956 Y_RNA.178-201ENST00000363832 102 ntBASIC0.55□□□□□ -2.32
MMP1P03956 Y_RNA.262-201ENST00000364641 102 ntBASIC0.55□□□□□ -2.32
MMP1P03956 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.55□□□□□ -2.32
MMP1P03956 RNU6-998P-201ENST00000515894 101 ntBASIC0.55□□□□□ -2.32
MMP1P03956 RNU6-1045P-201ENST00000516321 107 ntBASIC0.55□□□□□ -2.32
MMP1P03956 7SK.10-201ENST00000621414 298 ntBASIC0.55□□□□□ -2.32
MMP1P03956 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.55□□□□□ -2.32
MMP1P03956 Y_RNA.199-201ENST00000364014 102 ntBASIC0.54□□□□□ -2.32
MMP1P03956 VTRNA1-3-201ENST00000365645 89 ntBASIC0.54□□□□□ -2.32
MMP1P03956 RNU6-1189P-201ENST00000383958 107 ntBASIC0.54□□□□□ -2.32
MMP1P03956 Y_RNA.410-201ENST00000383992 113 ntBASIC0.54□□□□□ -2.32
MMP1P03956 SNORA26-201ENST00000391286 122 ntBASIC0.54□□□□□ -2.32
MMP1P03956 SNORD99-201ENST00000408612 74 ntBASIC0.54□□□□□ -2.32
MMP1P03956 MIR548H3-201ENST00000408771 118 ntBASIC0.54□□□□□ -2.32
MMP1P03956 RNU6-994P-201ENST00000410507 111 ntBASIC0.54□□□□□ -2.32
MMP1P03956 RNU4-43P-201ENST00000410628 137 ntBASIC0.54□□□□□ -2.32
MMP1P03956 AC015818.7-201ENST00000428754 109 ntBASIC0.54□□□□□ -2.32
MMP1P03956 AC087499.7-201ENST00000441958 109 ntBASIC0.54□□□□□ -2.32
MMP1P03956 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.54□□□□□ -2.32
MMP1P03956 AL138752.1-201ENST00000452964 351 ntBASIC0.54□□□□□ -2.32
MMP1P03956 MIR4264-201ENST00000583520 66 ntBASIC0.54□□□□□ -2.32
MMP1P03956 MIR4719-201ENST00000585233 84 ntBASIC0.54□□□□□ -2.32
MMP1P03956 MIR6740-201ENST00000618268 113 ntBASIC0.54□□□□□ -2.32
MMP1P03956 Y_RNA.20-201ENST00000362479 113 ntBASIC0.53□□□□□ -2.32
MMP1P03956 SNORD27-201ENST00000363981 72 ntBASIC0.53□□□□□ -2.32
MMP1P03956 Y_RNA.477-201ENST00000384352 108 ntBASIC0.53□□□□□ -2.32
MMP1P03956 Y_RNA.556-201ENST00000384677 113 ntBASIC0.53□□□□□ -2.32
MMP1P03956 RNU6-602P-201ENST00000411155 105 ntBASIC0.53□□□□□ -2.32
MMP1P03956 SNORD83.1-201ENST00000411362 77 ntBASIC0.53□□□□□ -2.32
MMP1P03956 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.53□□□□□ -2.32
MMP1P03956 AC067940.1-201ENST00000458411 300 ntBASIC0.53□□□□□ -2.32
MMP1P03956 RNU7-96P-201ENST00000459535 64 ntBASIC0.53□□□□□ -2.32
MMP1P03956 MIR4308-201ENST00000580634 81 ntBASIC0.53□□□□□ -2.32
MMP1P03956 AP000753.3-201ENST00000604083 169 ntBASIC0.53□□□□□ -2.32
MMP1P03956 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
MMP1P03956 RNU6-103P-201ENST00000363686 107 ntBASIC0.52□□□□□ -2.33
MMP1P03956 Y_RNA.308-201ENST00000365043 101 ntBASIC0.52□□□□□ -2.33
MMP1P03956 RNU6-728P-201ENST00000365375 104 ntBASIC0.52□□□□□ -2.33
MMP1P03956 SNORA26.6-201ENST00000391256 115 ntBASIC0.52□□□□□ -2.33
MMP1P03956 RNU6-493P-201ENST00000391321 108 ntBASIC0.52□□□□□ -2.33
MMP1P03956 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.52□□□□□ -2.33
MMP1P03956 AC114737.2-201ENST00000421583 173 ntBASIC0.52□□□□□ -2.33
MMP1P03956 AC244098.3-201ENST00000424803 96 ntBASIC0.52□□□□□ -2.33
MMP1P03956 RNU2-11P-201ENST00000459191 187 ntBASIC0.52□□□□□ -2.33
MMP1P03956 RNU7-53P-201ENST00000516705 60 ntBASIC0.52□□□□□ -2.33
MMP1P03956 MIR3129-201ENST00000581095 76 ntBASIC0.52□□□□□ -2.33
MMP1P03956 MIR4744-201ENST00000581563 82 ntBASIC0.52□□□□□ -2.33
MMP1P03956 MIR3128-201ENST00000581957 66 ntBASIC0.52□□□□□ -2.33
MMP1P03956 AL136317.1-201ENST00000612653 226 ntBASIC0.52□□□□□ -2.33
MMP1P03956 RNU6-978P-201ENST00000364371 103 ntBASIC0.51□□□□□ -2.33
MMP1P03956 RNU6-923P-201ENST00000364753 107 ntBASIC0.51□□□□□ -2.33
MMP1P03956 Y_RNA.350-201ENST00000365409 98 ntBASIC0.51□□□□□ -2.33
MMP1P03956 MIR548I3-201ENST00000408378 149 ntBASIC0.51□□□□□ -2.33
MMP1P03956 Y_RNA.626-201ENST00000411288 95 ntBASIC0.51□□□□□ -2.33
MMP1P03956 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.51□□□□□ -2.33
MMP1P03956 MTND3P2-201ENST00000438452 342 ntBASIC0.51□□□□□ -2.33
MMP1P03956 AL118496.2-201ENST00000448300 230 ntBASIC0.51□□□□□ -2.33
MMP1P03956 RNU7-62P-201ENST00000458856 62 ntBASIC0.51□□□□□ -2.33
MMP1P03956 RNU7-45P-201ENST00000459460 63 ntBASIC0.51□□□□□ -2.33
MMP1P03956 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.51□□□□□ -2.33
MMP1P03956 MIR4503-201ENST00000582187 83 ntBASIC0.51□□□□□ -2.33
MMP1P03956 MIR5197-201ENST00000583721 112 ntBASIC0.51□□□□□ -2.33
MMP1P03956 AL365205.2-201ENST00000594586 68 ntBASIC0.51□□□□□ -2.33
MMP1P03956 AC020891.4-201ENST00000605745 93 ntBASIC0.51□□□□□ -2.33
MMP1P03956 RNU2-4P-201ENST00000606190 192 ntBASIC0.51□□□□□ -2.33
MMP1P03956 AC062037.2-201ENST00000610137 73 ntBASIC0.51□□□□□ -2.33
MMP1P03956 MIR2909-201ENST00000617113 69 ntBASIC0.51□□□□□ -2.33
MMP1P03956 uc_338.17-201ENST00000619633 179 ntBASIC0.51□□□□□ -2.33
MMP1P03956 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
MMP1P03956 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.5□□□□□ -2.33
MMP1P03956 MIR1-1-201ENST00000362147 71 ntBASIC0.5□□□□□ -2.33
MMP1P03956 Y_RNA.7-201ENST00000362352 102 ntBASIC0.5□□□□□ -2.33
MMP1P03956 Y_RNA.60-201ENST00000362831 98 ntBASIC0.5□□□□□ -2.33
MMP1P03956 Y_RNA.65-201ENST00000362846 100 ntBASIC0.5□□□□□ -2.33
MMP1P03956 RNU6-934P-201ENST00000365154 107 ntBASIC0.5□□□□□ -2.33
MMP1P03956 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
MMP1P03956 RNU6-574P-201ENST00000384265 107 ntBASIC0.5□□□□□ -2.33
MMP1P03956 Y_RNA.542-201ENST00000384641 111 ntBASIC0.5□□□□□ -2.33
MMP1P03956 SNORD105-201ENST00000386910 85 ntBASIC0.5□□□□□ -2.33
MMP1P03956 RNU6-578P-201ENST00000390980 103 ntBASIC0.5□□□□□ -2.33
MMP1P03956 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.5□□□□□ -2.33
MMP1P03956 RNU4-54P-201ENST00000516428 129 ntBASIC0.5□□□□□ -2.33
MMP1P03956 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
MMP1P03956 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
MMP1P03956 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.49□□□□□ -2.33
MMP1P03956 Y_RNA.193-201ENST00000363979 102 ntBASIC0.49□□□□□ -2.33
MMP1P03956 SNORA1.1-201ENST00000364671 133 ntBASIC0.49□□□□□ -2.33
MMP1P03956 RNU6-1292P-201ENST00000383856 107 ntBASIC0.49□□□□□ -2.33
MMP1P03956 Y_RNA.447-201ENST00000384184 113 ntBASIC0.49□□□□□ -2.33
MMP1P03956 SNORD38B-201ENST00000384690 67 ntBASIC0.49□□□□□ -2.33
MMP1P03956 MIR563-201ENST00000385080 79 ntBASIC0.49□□□□□ -2.33
MMP1P03956 SNORD12C-201ENST00000386307 89 ntBASIC0.49□□□□□ -2.33
MMP1P03956 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 276.9 ms